BLASTX nr result

ID: Coptis23_contig00034158 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034158
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20282.3| unnamed protein product [Vitis vinifera]              134   1e-29
ref|XP_002282528.1| PREDICTED: dynamin-like protein C-like [Viti...   134   1e-29
ref|XP_002533903.1| ATP binding protein, putative [Ricinus commu...   128   5e-28
ref|XP_002891730.1| dynamin family protein [Arabidopsis lyrata s...   127   9e-28
gb|AAF69526.1|AC008007_1 F12M16.1 [Arabidopsis thaliana]              127   1e-27

>emb|CBI20282.3| unnamed protein product [Vitis vinifera]
          Length = 152

 Score =  134 bits (336), Expect = 1e-29
 Identities = 71/105 (67%), Positives = 82/105 (78%), Gaps = 8/105 (7%)
 Frame = +1

Query: 13  ENVGRKRQSRMIAANKNVDNLQRRNN--------DISSRSGSAYSYTCSAAAQHFAKIRE 168
           E+  RKRQ+RMI  ++N DNL+  N         D   RSGSAYS  CS+AAQHFA+IRE
Sbjct: 13  EHGARKRQARMIGHSRNSDNLRLTNAGSFLFGNADSGLRSGSAYSDICSSAAQHFARIRE 72

Query: 169 VLIERLVPSTLNSGFLTPCRDRLVVALGLDMFAVNDEKFMDMFVA 303
           VL+ER V STLNSGFLTPCRDRL++ALGLD+FAVNDEKFMDMFVA
Sbjct: 73  VLVERSVMSTLNSGFLTPCRDRLMMALGLDLFAVNDEKFMDMFVA 117


>ref|XP_002282528.1| PREDICTED: dynamin-like protein C-like [Vitis vinifera]
          Length = 821

 Score =  134 bits (336), Expect = 1e-29
 Identities = 71/105 (67%), Positives = 82/105 (78%), Gaps = 8/105 (7%)
 Frame = +1

Query: 13  ENVGRKRQSRMIAANKNVDNLQRRNN--------DISSRSGSAYSYTCSAAAQHFAKIRE 168
           E+  RKRQ+RMI  ++N DNL+  N         D   RSGSAYS  CS+AAQHFA+IRE
Sbjct: 682 EHGARKRQARMIGHSRNSDNLRLTNAGSFLFGNADSGLRSGSAYSDICSSAAQHFARIRE 741

Query: 169 VLIERLVPSTLNSGFLTPCRDRLVVALGLDMFAVNDEKFMDMFVA 303
           VL+ER V STLNSGFLTPCRDRL++ALGLD+FAVNDEKFMDMFVA
Sbjct: 742 VLVERSVMSTLNSGFLTPCRDRLMMALGLDLFAVNDEKFMDMFVA 786


>ref|XP_002533903.1| ATP binding protein, putative [Ricinus communis]
            gi|223526136|gb|EEF28477.1| ATP binding protein, putative
            [Ricinus communis]
          Length = 819

 Score =  128 bits (321), Expect = 5e-28
 Identities = 69/109 (63%), Positives = 82/109 (75%), Gaps = 8/109 (7%)
 Frame = +1

Query: 1    GNCIENVGRKRQSRMIAANKNVDNLQRRNN--------DISSRSGSAYSYTCSAAAQHFA 156
            GNCIE   +KR SRM   ++N ++L+ +N         D  SRS SAYS  CS+AAQHFA
Sbjct: 676  GNCIEVGPKKRISRMTGNSRNTEHLRVQNGGGLLFGNGDSGSRSCSAYSEICSSAAQHFA 735

Query: 157  KIREVLIERLVPSTLNSGFLTPCRDRLVVALGLDMFAVNDEKFMDMFVA 303
            +IREVL+ER V STLNSGFLTPCRDRLVVALGLD+FAV+D +F DMFVA
Sbjct: 736  RIREVLVERSVMSTLNSGFLTPCRDRLVVALGLDLFAVSDVRFTDMFVA 784


>ref|XP_002891730.1| dynamin family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297337572|gb|EFH67989.1| dynamin family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 817

 Score =  127 bits (319), Expect = 9e-28
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 8/109 (7%)
 Frame = +1

Query: 1   GNCIENVG-RKRQSRMIAANKNVD-------NLQRRNNDISSRSGSAYSYTCSAAAQHFA 156
           GN  + VG RKR +RM+  N+N++        L   N D   +S SAYS  CS+AAQHFA
Sbjct: 675 GNGPDGVGARKRMARMVG-NRNIEPFRVQNGGLMFGNGDNGMKSSSAYSEICSSAAQHFA 733

Query: 157 KIREVLIERLVPSTLNSGFLTPCRDRLVVALGLDMFAVNDEKFMDMFVA 303
           +IREVL+ER V STLNSGFLTPCRDRLVVALGLD+FAVND+KFMDMFVA
Sbjct: 734 RIREVLVERSVTSTLNSGFLTPCRDRLVVALGLDLFAVNDDKFMDMFVA 782


>gb|AAF69526.1|AC008007_1 F12M16.1 [Arabidopsis thaliana]
          Length = 286

 Score =  127 bits (318), Expect = 1e-27
 Identities = 70/109 (64%), Positives = 82/109 (75%), Gaps = 8/109 (7%)
 Frame = +1

Query: 1   GNCIENVG-RKRQSRMIAANKNVD-------NLQRRNNDISSRSGSAYSYTCSAAAQHFA 156
           GN  + VG RKR +RM+  N+N++        L   N D   +S SAYS  CS+AAQHFA
Sbjct: 144 GNGPDGVGARKRMARMVG-NRNIEPFRVQNGGLMFANADNGMKSSSAYSEICSSAAQHFA 202

Query: 157 KIREVLIERLVPSTLNSGFLTPCRDRLVVALGLDMFAVNDEKFMDMFVA 303
           +IREVL+ER V STLNSGFLTPCRDRLVVALGLD+FAVND+KFMDMFVA
Sbjct: 203 RIREVLVERSVTSTLNSGFLTPCRDRLVVALGLDLFAVNDDKFMDMFVA 251


Top