BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034148
         (1156 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methy...   599   e-169
ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|2...   590   e-166
ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B...   586   e-165
ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferas...   586   e-165
ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methy...   582   e-164

>ref|XP_002266112.1| PREDICTED: ribosomal RNA small subunit methyltransferase B [Vitis
            vinifera] gi|296089930|emb|CBI39749.3| unnamed protein
            product [Vitis vinifera]
          Length = 525

 Score =  599 bits (1544), Expect = e-169
 Identities = 300/373 (80%), Positives = 331/373 (88%)
 Frame = +3

Query: 36   LNLQVSPHRAVSAVRLMRIEYGGAFADLLNTKGKGSGANEMGYVERTLGFRTXXXXXXXX 215
            +NL++SPHRAVSAVRLMRIE GGAFADLLN +GKGSG NEMGYVERTLGFRT        
Sbjct: 52   VNLEISPHRAVSAVRLMRIELGGAFADLLNERGKGSGDNEMGYVERTLGFRTRDLDDRDL 111

Query: 216  XXVTDIVGGTIRWRRYLDHLIVALCHDERAFRSMEPLLLQILRIGFYEILKLDMPPYAVV 395
              VTDIVGG+IRWRRYLDHLIV+LCHD + FRSMEPLLLQILRIGFYEI+ LDMPPYAVV
Sbjct: 112  RLVTDIVGGSIRWRRYLDHLIVSLCHDSKTFRSMEPLLLQILRIGFYEIVNLDMPPYAVV 171

Query: 396  DENVTLAKVALRPGAGNMVNGILRRLVFLKENNSLPLPKVEGNDRMQARALATLYSHPVW 575
            DENV LAKVALRPGAGNMVN ILR+LV LKE NSLPLPK+EG+DR QARALATLYSHPVW
Sbjct: 172  DENVRLAKVALRPGAGNMVNAILRKLVLLKEKNSLPLPKLEGDDRAQARALATLYSHPVW 231

Query: 576  MVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELSRNLD 755
            MVRRW KYLGQEEA +LM WNN +PSFSLRAN+ KGF+RADLV RL+ LKVPHELS +LD
Sbjct: 232  MVRRWTKYLGQEEAIKLMMWNNSEPSFSLRANSGKGFTRADLVMRLKMLKVPHELSPHLD 291

Query: 756  DFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKTLFMA 935
            +FVRI TGMQ +IQA LLK+GLCSVQDES GLVVSVVDPQPGESI+DCCAAPGGKT+FMA
Sbjct: 292  NFVRIRTGMQIVIQAQLLKEGLCSVQDESAGLVVSVVDPQPGESIIDCCAAPGGKTIFMA 351

Query: 936  SRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKFDKVLLDA 1115
            S L G+GMV+A+DIN+GRLR++KETAKL  VD V++TVHADL  FA+NN VK DKVLLDA
Sbjct: 352  SCLSGQGMVHAIDINKGRLRIVKETAKLLLVDDVITTVHADLCTFAKNNPVKSDKVLLDA 411

Query: 1116 PCSGLGVLSKRAD 1154
            PCSGLGVLSKRAD
Sbjct: 412  PCSGLGVLSKRAD 424


>ref|XP_002300381.1| predicted protein [Populus trichocarpa] gi|222847639|gb|EEE85186.1|
            predicted protein [Populus trichocarpa]
          Length = 527

 Score =  590 bits (1520), Expect = e-166
 Identities = 292/377 (77%), Positives = 333/377 (88%)
 Frame = +3

Query: 24   RPNKLNLQVSPHRAVSAVRLMRIEYGGAFADLLNTKGKGSGANEMGYVERTLGFRTXXXX 203
            +  KLNLQVSPHRAVSAVRLMRIE GGAFADLLN KGKGSG NEMGYVERTLGFRT    
Sbjct: 50   KTQKLNLQVSPHRAVSAVRLMRIEMGGAFADLLNDKGKGSGDNEMGYVERTLGFRTKDLD 109

Query: 204  XXXXXXVTDIVGGTIRWRRYLDHLIVALCHDERAFRSMEPLLLQILRIGFYEILKLDMPP 383
                  VTDIVGGTIRWRRYLD+LI +LCHDE+AFRSMEPLLLQILRIGFYEI+KLDMP 
Sbjct: 110  DRDLRLVTDIVGGTIRWRRYLDYLIGSLCHDEKAFRSMEPLLLQILRIGFYEIVKLDMPS 169

Query: 384  YAVVDENVTLAKVALRPGAGNMVNGILRRLVFLKENNSLPLPKVEGNDRMQARALATLYS 563
            YAVVDENV LAKV+LRPGAGNMVNGILR+LV LKE+NSLPLPK+EG+DR QARALATLYS
Sbjct: 170  YAVVDENVRLAKVSLRPGAGNMVNGILRKLVLLKESNSLPLPKLEGDDRAQARALATLYS 229

Query: 564  HPVWMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELS 743
            HPVWMVRRW K LGQE+A +LM WNN +PSFSLRAN+ KG +RADLV +   LKVPHELS
Sbjct: 230  HPVWMVRRWTKLLGQEKAIKLMMWNNDNPSFSLRANSGKGVTRADLVMQFNMLKVPHELS 289

Query: 744  RNLDDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKT 923
             +LD FVR+ TG+Q +IQAGLLK GLC+VQDES GL+VSVV+PQPG+SI+DCCAAPGGKT
Sbjct: 290  LHLDHFVRVKTGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKT 349

Query: 924  LFMASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKFDKV 1103
            L+MAS++ G+GM+YA+DIN+GRLR++KETAKLH+VD V++T+ +DLR FAE+  +K DKV
Sbjct: 350  LYMASQMHGQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKV 409

Query: 1104 LLDAPCSGLGVLSKRAD 1154
            LLDAPCSGLGVLSKRAD
Sbjct: 410  LLDAPCSGLGVLSKRAD 426


>ref|NP_187924.2| ribosomal RNA small subunit methyltransferase B [Arabidopsis
            thaliana] gi|18176252|gb|AAL60011.1| putative sun protein
            fmu [Arabidopsis thaliana] gi|21436219|gb|AAM51397.1|
            putative sun protein fmu [Arabidopsis thaliana]
            gi|110740623|dbj|BAE98415.1| putative sun (fmu) protein
            [Arabidopsis thaliana] gi|332641785|gb|AEE75306.1|
            ribosomal RNA small subunit methyltransferase B
            [Arabidopsis thaliana]
          Length = 523

 Score =  586 bits (1511), Expect = e-165
 Identities = 284/377 (75%), Positives = 331/377 (87%)
 Frame = +3

Query: 24   RPNKLNLQVSPHRAVSAVRLMRIEYGGAFADLLNTKGKGSGANEMGYVERTLGFRTXXXX 203
            +   LNL+VSPHRAVSAVRLMRIEYGGAFADLLN KGKGSG+NEM YVERT+GFRT    
Sbjct: 46   KSQNLNLEVSPHRAVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLD 105

Query: 204  XXXXXXVTDIVGGTIRWRRYLDHLIVALCHDERAFRSMEPLLLQILRIGFYEILKLDMPP 383
                  VTD+VGGTIRWRRYLDHLI +LCH+ER FR+MEPLLLQILRIG YEI+K DMPP
Sbjct: 106  DRDLRLVTDVVGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPP 165

Query: 384  YAVVDENVTLAKVALRPGAGNMVNGILRRLVFLKENNSLPLPKVEGNDRMQARALATLYS 563
            YAVVDENV LAKVALRPGAG+ VNGILR+LV LKE ++LPLPKVEG+DR QARALATL+S
Sbjct: 166  YAVVDENVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHS 225

Query: 564  HPVWMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELS 743
            HPVWMVRRW+KYLG +EA +LM WNN DP FSLRANT +  +RADLV+RL +LKVPHELS
Sbjct: 226  HPVWMVRRWVKYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELS 285

Query: 744  RNLDDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKT 923
             +L++FVRI TG+Q ++QAGLLK+G+CSVQDES GL+VSVV PQPGE I+D CAAPGGKT
Sbjct: 286  LHLEEFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKT 345

Query: 924  LFMASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKFDKV 1103
            LFMAS L+G+GM+YA+D+NEGRLR+L ETAK H+VD +++T+H+DLR+FAE N V++DKV
Sbjct: 346  LFMASCLKGQGMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKV 405

Query: 1104 LLDAPCSGLGVLSKRAD 1154
            LLDAPCSGLGVLSKRAD
Sbjct: 406  LLDAPCSGLGVLSKRAD 422


>ref|XP_003617839.1| Ribosomal RNA small subunit methyltransferase [Medicago truncatula]
            gi|355519174|gb|AET00798.1| Ribosomal RNA small subunit
            methyltransferase [Medicago truncatula]
          Length = 654

 Score =  586 bits (1510), Expect = e-165
 Identities = 292/377 (77%), Positives = 324/377 (85%)
 Frame = +3

Query: 24   RPNKLNLQVSPHRAVSAVRLMRIEYGGAFADLLNTKGKGSGANEMGYVERTLGFRTXXXX 203
            +P KLN  +SPHRAVSAVRLMRIE GGAFADLLN KGKGSG NEMGYV+RTLGFRT    
Sbjct: 53   KPQKLNSDISPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELN 112

Query: 204  XXXXXXVTDIVGGTIRWRRYLDHLIVALCHDERAFRSMEPLLLQILRIGFYEILKLDMPP 383
                  VT+IVGGTIRWRRYLDHLI +LCHD +   SMEPLLLQILRIGFYEI+KLDMPP
Sbjct: 113  NQDLRLVTEIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILRIGFYEIVKLDMPP 171

Query: 384  YAVVDENVTLAKVALRPGAGNMVNGILRRLVFLKENNSLPLPKVEGNDRMQARALATLYS 563
            YAVVDENV LAK ALRPGAGNMVNG+LR+LV LKEN +LPLPKVEG+DR QARALATLYS
Sbjct: 172  YAVVDENVQLAKAALRPGAGNMVNGVLRKLVVLKENETLPLPKVEGDDRSQARALATLYS 231

Query: 564  HPVWMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELS 743
            HPVW+VRRW KYLGQEEA +LM WNN +PS+SLRAN AKGFSR DLV  L  LKVPH+LS
Sbjct: 232  HPVWIVRRWTKYLGQEEAIKLMIWNNIEPSYSLRANRAKGFSRDDLVTELNALKVPHKLS 291

Query: 744  RNLDDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKT 923
             +LDDFVRI TG+Q II AGL K+GLCSVQDES GL+VS+VDPQPGE+IVDCCAAPGGKT
Sbjct: 292  LHLDDFVRIKTGLQIIIHAGLFKEGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKT 351

Query: 924  LFMASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKFDKV 1103
            L+MA+ L G+GMVYAVD+N GRLR+LKETAKLH+VD VV+TVHADLR   +   +K +KV
Sbjct: 352  LYMAAHLSGQGMVYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTDGEPLKSNKV 411

Query: 1104 LLDAPCSGLGVLSKRAD 1154
            LLDAPCSGLGVLSKRAD
Sbjct: 412  LLDAPCSGLGVLSKRAD 428


>ref|XP_003519634.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like
            [Glycine max]
          Length = 528

 Score =  582 bits (1499), Expect = e-164
 Identities = 292/377 (77%), Positives = 324/377 (85%)
 Frame = +3

Query: 24   RPNKLNLQVSPHRAVSAVRLMRIEYGGAFADLLNTKGKGSGANEMGYVERTLGFRTXXXX 203
            +  KLN +VSPHRAVSAVRLMRIE GGAFADLLN KGKGSG NEMGYV+RTLGFRT    
Sbjct: 52   KTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELN 111

Query: 204  XXXXXXVTDIVGGTIRWRRYLDHLIVALCHDERAFRSMEPLLLQILRIGFYEILKLDMPP 383
                  VTDIVGGTIRWRRYLDHLI +LCHD +   SMEPLLLQILRIGFYEI+KLDMPP
Sbjct: 112  HHDLRLVTDIVGGTIRWRRYLDHLISSLCHD-KDISSMEPLLLQILRIGFYEIVKLDMPP 170

Query: 384  YAVVDENVTLAKVALRPGAGNMVNGILRRLVFLKENNSLPLPKVEGNDRMQARALATLYS 563
            YAVVDENV LAK ALRPGAGNMVNGILR+LV LKE  SLPLPKVEG+DR QARALATLYS
Sbjct: 171  YAVVDENVKLAKFALRPGAGNMVNGILRKLVVLKEKESLPLPKVEGDDRAQARALATLYS 230

Query: 564  HPVWMVRRWIKYLGQEEAKRLMAWNNCDPSFSLRANTAKGFSRADLVKRLETLKVPHELS 743
            HPVWMVRRW KYLGQEEA +LM WNN +PSFSLRAN A+GFSR DLV +L  LKVPH+LS
Sbjct: 231  HPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRARGFSRDDLVTQLNALKVPHKLS 290

Query: 744  RNLDDFVRITTGMQNIIQAGLLKDGLCSVQDESTGLVVSVVDPQPGESIVDCCAAPGGKT 923
             +LD+FVRI TG+Q IIQAGLLK GLCSVQDES GLVVSVVDPQPGE+I+DCCAAPGGKT
Sbjct: 291  PHLDEFVRIKTGLQIIIQAGLLKKGLCSVQDESAGLVVSVVDPQPGETIIDCCAAPGGKT 350

Query: 924  LFMASRLRGRGMVYAVDINEGRLRVLKETAKLHEVDVVVSTVHADLRIFAENNVVKFDKV 1103
            L+MAS L G+G V+A+D+N GRLR+LKETAKLH+VD V++ +HADLR   ++  +K +KV
Sbjct: 351  LYMASHLSGQGKVFAIDVNSGRLRILKETAKLHQVDGVITAIHADLRTLPDSGQLKSNKV 410

Query: 1104 LLDAPCSGLGVLSKRAD 1154
            LLDAPCSGLGVLSKRAD
Sbjct: 411  LLDAPCSGLGVLSKRAD 427