BLASTX nr result

ID: Coptis23_contig00034056 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034056
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310174.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12
emb|CBI32505.3| unnamed protein product [Vitis vinifera]               72   5e-11
ref|XP_002281443.1| PREDICTED: uncharacterized membrane protein ...    71   1e-10
ref|XP_002522369.1| conserved hypothetical protein [Ricinus comm...    71   1e-10
gb|ABR16110.1| unknown [Picea sitchensis]                              57   7e-08

>ref|XP_002310174.1| predicted protein [Populus trichocarpa] gi|222853077|gb|EEE90624.1|
           predicted protein [Populus trichocarpa]
          Length = 548

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 35/52 (67%), Positives = 39/52 (75%)
 Frame = +2

Query: 2   FILLFVLGFVKAAIFSPFVFLVIAFGDTGVIIGL*PLHLFWIACCISKHHLF 157
           F+ LF LG +K AIFSPFVFLVIAFGDTG++IGL PLHL W   CI K   F
Sbjct: 21  FLFLFFLGCIKGAIFSPFVFLVIAFGDTGIVIGLWPLHLIWSMYCIIKSKRF 72


>emb|CBI32505.3| unnamed protein product [Vitis vinifera]
          Length = 1019

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 32/52 (61%), Positives = 38/52 (73%)
 Frame = +2

Query: 2   FILLFVLGFVKAAIFSPFVFLVIAFGDTGVIIGL*PLHLFWIACCISKHHLF 157
           F+LLF LG +K  IFSPFVFLVIAFGD GV++GL P HL W   CI++   F
Sbjct: 21  FVLLFALGIIKGGIFSPFVFLVIAFGDIGVVVGLWPCHLVWTVYCINRTKKF 72


>ref|XP_002281443.1| PREDICTED: uncharacterized membrane protein At3g27390-like [Vitis
           vinifera]
          Length = 547

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 32/52 (61%), Positives = 37/52 (71%)
 Frame = +2

Query: 2   FILLFVLGFVKAAIFSPFVFLVIAFGDTGVIIGL*PLHLFWIACCISKHHLF 157
           F+LLF LG +K  IFSPFVFLVIAFGD GV++GL P HL W   CI +   F
Sbjct: 21  FVLLFALGIIKGGIFSPFVFLVIAFGDIGVVVGLWPCHLVWTVYCIVRTKKF 72


>ref|XP_002522369.1| conserved hypothetical protein [Ricinus communis]
           gi|223538447|gb|EEF40053.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 550

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 33/51 (64%), Positives = 38/51 (74%)
 Frame = +2

Query: 5   ILLFVLGFVKAAIFSPFVFLVIAFGDTGVIIGL*PLHLFWIACCISKHHLF 157
           +LLF+L  +K AIFSPFV LVIAFGDTGV+IGL PLHL W   C+ K   F
Sbjct: 22  VLLFILAIIKGAIFSPFVLLVIAFGDTGVVIGLWPLHLVWSIYCLIKTKKF 72


>gb|ABR16110.1| unknown [Picea sitchensis]
          Length = 605

 Score = 56.6 bits (135), Expect(2) = 7e-08
 Identities = 25/46 (54%), Positives = 32/46 (69%)
 Frame = +2

Query: 2   FILLFVLGFVKAAIFSPFVFLVIAFGDTGVIIGL*PLHLFWIACCI 139
           FILLF+LG +K AIF P V+LVI  G++ VI GL P H+ W   C+
Sbjct: 21  FILLFLLGIIKGAIFCPVVWLVITIGNSAVIFGLWPAHVIWTYVCV 66



 Score = 24.6 bits (52), Expect(2) = 7e-08
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 235 LKTLLILTLPMPISLWTVMAL 297
           LK +L + LP+P+ LW ++ L
Sbjct: 76  LKAVLCIGLPVPLILWPLVGL 96


Top