BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034017
         (592 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,...   140   2e-31
ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containi...   139   4e-31
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ...   120   2e-25

>ref|XP_004163031.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1061

 Score =  144 bits (363), Expect = 1e-32
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
 Frame = +3

Query: 93  SYTSSRN-LFKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNDNNIKG 269
           S+T S N    +  LQ LLKSGF+PTLK++NHF  FL  +   +++++FF Q+N N IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 270 DSQTHSIITRTLIKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 446
           +S+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 447 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRY 590
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  Y
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNY 182


>ref|XP_004148334.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Cucumis sativus]
          Length = 1085

 Score =  144 bits (363), Expect = 1e-32
 Identities = 73/168 (43%), Positives = 109/168 (64%), Gaps = 2/168 (1%)
 Frame = +3

Query: 93  SYTSSRN-LFKTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNDNNIKG 269
           S+T S N    +  LQ LLKSGF+PTLK++NHF  FL  +   +++++FF Q+N N IKG
Sbjct: 15  SFTFSSNPSSNSRCLQTLLKSGFSPTLKSINHFFRFLYHNRRFDYVIHFFYQLNANQIKG 74

Query: 270 DSQTHSIITRTLIKANRYEEAEHFM-TQMLKDGHFPQKGICDSLIQGLISPGESPERAFS 446
           +S+TH I++  L+K+++Y++ E  + TQML    F +  + + LI+G+    E P +A  
Sbjct: 75  NSKTHLILSWALLKSHKYDDLEQILKTQMLVSSIFHRNRLWNLLIRGICVNKEDPGKALW 134

Query: 447 VLQQCLKFRGMSPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRY 590
           VLQ C +   + PS FTFC+L+H F   G MD+ +E+LELMS EN  Y
Sbjct: 135 VLQDCFRNHAILPSSFTFCVLIHKFCSLGMMDKAVEILELMSDENVNY 182


>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 932

 Score =  140 bits (352), Expect = 2e-31
 Identities = 72/156 (46%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
 Frame = +3

Query: 129 SLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNDNNIKGDSQTHSIITRTLI 308
           S+QNLLK GFTPTLK++N +L FL K +    + +F SQ+N N I+G+ QTHS+    L+
Sbjct: 25  SIQNLLKRGFTPTLKSINQYLLFLVKIHKFTLVPHFLSQLNQNQIEGNYQTHSLFLLALL 84

Query: 309 KANRYEEAEHFMTQMLKDGHFPQKG--ICDSLIQGLISPGESPERAFSVLQQCLKFRGMS 482
           K   +EEAEHF+           KG    DSLIQ + +  + P +A  VL  CL+  GM 
Sbjct: 85  KLKNFEEAEHFIKTHRAKSSSSSKGHKFLDSLIQAISTDEKDPNKALLVLHDCLRNYGML 144

Query: 483 PSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRY 590
           PS FTFC ++HSF   GNM   I+VLELM+ E   Y
Sbjct: 145 PSSFTFCSVIHSFVLQGNMSGAIQVLELMNDEKINY 180


>ref|XP_003547448.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
           mitochondrial-like [Glycine max]
          Length = 1064

 Score =  139 bits (350), Expect = 4e-31
 Identities = 75/157 (47%), Positives = 101/157 (64%)
 Frame = +3

Query: 120 KTLSLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNDNNIKGDSQTHSIITR 299
           +TLSLQ  LK GFTPT K +N FL FL +    N + +FFSQ+  NN   + +T S++T 
Sbjct: 6   RTLSLQTSLKRGFTPTPKPINCFLLFLFRHRKFNLITHFFSQLKSNNAPTNRRTLSLLTW 65

Query: 300 TLIKANRYEEAEHFMTQMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGM 479
           +L+K++++EEAE FM       H     + DSLIQGL      PE+A SVLQ+C++ RG+
Sbjct: 66  SLLKSHKFEEAEQFMH---SHTHITHSSMWDSLIQGL----HDPEKALSVLQRCVRDRGV 118

Query: 480 SPSRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRY 590
            PS  TFC++VH  S  G M R IEVLELM+G+  RY
Sbjct: 119 LPSSSTFCLVVHKLSSKGLMGRAIEVLELMAGDGVRY 155


>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g57250, mitochondrial; Flags: Precursor
           gi|332009488|gb|AED96871.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 971

 Score =  120 bits (301), Expect = 2e-25
 Identities = 61/155 (39%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
 Frame = +3

Query: 129 SLQNLLKSGFTPTLKTLNHFLSFLSKSNHLNFLLYFFSQMNDNNIKGDSQTHSIITRTLI 308
           SLQ+LLKSGF+PTL +++ FL +L +    N +L F+SQ++   I  + + +SI++   +
Sbjct: 13  SLQSLLKSGFSPTLNSIDRFLRYLYRLQKFNCILQFYSQLDSKQININHRIYSIVSWAFL 72

Query: 309 KANRYEEAEHFMT-QMLKDGHFPQKGICDSLIQGLISPGESPERAFSVLQQCLKFRGMSP 485
             NRYE+AE F+   + K   FP+  + DSLI G     + P +   +L+ CL+  G  P
Sbjct: 73  NLNRYEDAEKFINIHISKASIFPRTHMLDSLIHGFSITRDDPSKGLLILRDCLRNHGAFP 132

Query: 486 SRFTFCMLVHSFSCYGNMDRVIEVLELMSGENFRY 590
           S  TFC L++ F   G MD  IEVLE+M+ +N  Y
Sbjct: 133 SSLTFCSLIYRFVEKGEMDNAIEVLEMMTNKNVNY 167