BLASTX nr result

ID: Coptis23_contig00034012 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034012
         (235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-...    75   7e-12
ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-...    75   7e-12
emb|CBI36548.3| unnamed protein product [Vitis vinifera]               75   7e-12
ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12
emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera]    75   7e-12

>ref|XP_003633181.1| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like
           isoform 2 [Vitis vinifera]
          Length = 795

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +2

Query: 89  AEKRPAPVAKINPDELCKKTVSLLKEYFGIRILDEALQCVEELKAPEFH 235
           AEK   P A++N D+L +KTVSLL+EYFG+RILDEALQCVEELK+P +H
Sbjct: 616 AEKPVTPAARLNSDDLRRKTVSLLEEYFGVRILDEALQCVEELKSPAYH 664


>ref|XP_002277218.2| PREDICTED: eukaryotic initiation factor iso-4F subunit p82-34-like
           isoform 1 [Vitis vinifera]
          Length = 794

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +2

Query: 89  AEKRPAPVAKINPDELCKKTVSLLKEYFGIRILDEALQCVEELKAPEFH 235
           AEK   P A++N D+L +KTVSLL+EYFG+RILDEALQCVEELK+P +H
Sbjct: 615 AEKPVTPAARLNSDDLRRKTVSLLEEYFGVRILDEALQCVEELKSPAYH 663


>emb|CBI36548.3| unnamed protein product [Vitis vinifera]
          Length = 630

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +2

Query: 89  AEKRPAPVAKINPDELCKKTVSLLKEYFGIRILDEALQCVEELKAPEFH 235
           AEK   P A++N D+L +KTVSLL+EYFG+RILDEALQCVEELK+P +H
Sbjct: 527 AEKPVTPAARLNSDDLRRKTVSLLEEYFGVRILDEALQCVEELKSPAYH 575


>ref|XP_002324526.1| predicted protein [Populus trichocarpa] gi|222865960|gb|EEF03091.1|
           predicted protein [Populus trichocarpa]
          Length = 793

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +2

Query: 2   RPSNTATAIDPVAYSXXXXXXXXXXXXXXAEKRPA-PVAKINPDELCKKTVSLLKEYFGI 178
           RPSN+    +P A +                +RP    A++NPDEL +KTVSLLKEYF +
Sbjct: 584 RPSNSGFGAEPPAQASLPSKTLPAPSVPPVSERPVVSAARVNPDELKRKTVSLLKEYFSV 643

Query: 179 RILDEALQCVEELKAPEFH 235
            +LDEALQCVEELK+P +H
Sbjct: 644 LLLDEALQCVEELKSPGYH 662


>emb|CAN70546.1| hypothetical protein VITISV_013807 [Vitis vinifera]
          Length = 794

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 34/49 (69%), Positives = 42/49 (85%)
 Frame = +2

Query: 89  AEKRPAPVAKINPDELCKKTVSLLKEYFGIRILDEALQCVEELKAPEFH 235
           AEK   P A++N D+L +KTVSLL+EYFG+RILDEALQCVEELK+P +H
Sbjct: 615 AEKPVTPAARLNSDDLRRKTVSLLEEYFGVRILDEALQCVEELKSPAYH 663


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