BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00034003
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298144.1| predicted protein [Populus trichocarpa] gi|2...    68   7e-10
ref|XP_003620928.1| F-box protein [Medicago truncatula] gi|35549...    65   4e-09
ref|XP_002517454.1| conserved hypothetical protein [Ricinus comm...    62   4e-08
ref|XP_003623247.1| F-box family protein [Medicago truncatula] g...    61   8e-08
ref|XP_002516807.1| ubiquitin-protein ligase, putative [Ricinus ...    61   8e-08

>ref|XP_002298144.1| predicted protein [Populus trichocarpa] gi|222845402|gb|EEE82949.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 43/136 (31%), Positives = 68/136 (50%)
 Frame = -3

Query: 408 LTMDLHLNILSRLPLKTISQCRWVSKTWYTFILHPHFAKLHFTKSSSSPCLFIHHYALTA 229
           L  ++ ++ILSRLP++ ++QC+ V K+W   +  P+FA+LHF K+  S  LF H      
Sbjct: 24  LPAEIFVDILSRLPVEAMTQCKSVCKSWRDLLSTPYFARLHFAKAKPSSLLFCHCSGNKT 83

Query: 228 IVFYVIDHQDFDNNETIVTGYNSKLGDYMMDSHQFLYYYDVLGSVNGLVCFALQSWRYTN 49
            ++    H    +N  I     S    + +  + F     V+GS NGL+C +        
Sbjct: 84  KLYCCHIHSSRGSN--INNAMVSMPTKFKLPKNTF--RGKVVGSSNGLLCLS----EIHR 135

Query: 48  YSSPFFICNPITRAYL 1
               F+ICNPIT  Y+
Sbjct: 136 MKKKFYICNPITGEYI 151


>ref|XP_003620928.1| F-box protein [Medicago truncatula] gi|355495943|gb|AES77146.1|
           F-box protein [Medicago truncatula]
          Length = 447

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
 Frame = -3

Query: 399 DLHLNILSRLPLKTISQCRWVSKTWYTFILHPHFAKLHFTKSSSSPCLFI----HHYALT 232
           DL   IL+ LP+KTI+Q + VSK+W T I  P F K+H  +SS +P   +      Y++ 
Sbjct: 15  DLIAIILTFLPVKTITQLKLVSKSWNTLITSPSFIKIHLNQSSQNPNFILTPSRKQYSIN 74

Query: 231 AIVFYVIDHQDFDNNETIVTGYNSKLGDYMMDSHQFLYYYDVLGSVNGLVCFALQSWRYT 52
            ++   I          ++TG N+  GD   +     +++ V+GS NGL+C   +S   T
Sbjct: 75  NVLSVPIPR--------LLTG-NTVSGDTYHNILNNDHHFRVVGSCNGLLCLLFKSEFIT 125

Query: 51  NYSSPFFICNPITR 10
           +    F I NP TR
Sbjct: 126 HLKFRFRIWNPATR 139


>ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis]
           gi|223543465|gb|EEF44996.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 401

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
 Frame = -3

Query: 411 KLTMDLHLNILSRLPLKTISQCRWVSKTWYTFILHPHFAKLHFTKSSSSP--CLFIHHYA 238
           KL  +++ +ILSR P+ ++ +C+ VS+ WYT + +P  A +H  +++      LF   + 
Sbjct: 21  KLPQEIYFDILSRQPIVSLLECKPVSRHWYTSVRNPLLANMHLNRAAEQNLCLLFFSDWP 80

Query: 237 LTAIVFYVIDHQDFDNNETIVTGYNSKLGDYMMDSHQFLYYYDVLGSVNGLVCFALQSWR 58
            + +    ++H +    +T+ T + S L +           ++V+GS NGL+C       
Sbjct: 81  RSKLELVQVEHPEPRKLKTLKTPFESVLSE-----------FEVVGSCNGLICL------ 123

Query: 57  YTNYS-SPFFICNPIT 13
           Y  +S  P +I NP T
Sbjct: 124 YDYFSDDPLYIYNPFT 139


>ref|XP_003623247.1| F-box family protein [Medicago truncatula]
           gi|355498262|gb|AES79465.1| F-box family protein
           [Medicago truncatula]
          Length = 396

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
 Frame = -3

Query: 408 LTMDLHLNILSRLPLKTISQCRWVSKTWYTFILHPHFAKLHFTKSSSSPCLFIH------ 247
           L  DL L IL RLP+K++ Q + V K+W +FI HP FAK HF  S+ +  LF H      
Sbjct: 49  LPFDLVLEILYRLPVKSLMQFKCVCKSWKSFISHPKFAKKHFCVSTKTHHLFFHCKPKGS 108

Query: 246 -HYALTAIVFYVIDHQDFDNNETIVTGYNSKLGDYMMDSHQFLYYYDVLGSVNGLVCFAL 70
             Y + A     I    F    T       +L DY + +   L    + GS +G++C  L
Sbjct: 109 FEYIIKAFPLSTI----FTKKVTPTATTTQQL-DYPLSNPNCLNCDRIRGSCHGILCIVL 163

Query: 69  QSWRYTNYSSPFFICNPITRAY 4
               YT Y     + NP  R +
Sbjct: 164 ----YTGY---VILWNPSIRKF 178


>ref|XP_002516807.1| ubiquitin-protein ligase, putative [Ricinus communis]
           gi|223543895|gb|EEF45421.1| ubiquitin-protein ligase,
           putative [Ricinus communis]
          Length = 358

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
 Frame = -3

Query: 408 LTMDLHLNILSRLPLKTISQCRWVSKTWYTFILHPHFAKLHFTKSSSSPCLFIHHYALTA 229
           L  D+ L+IL RLP+K++ + + V K+W+  I  PHF  +H + ++ + C+  H + L  
Sbjct: 4   LVQDVVLHILLRLPVKSLCRFKVVCKSWWLLISDPHFISMHLSLATKNNCINCHRWRLCL 63

Query: 228 IVF-----YVIDHQDFDNNETIVTGYNSKLGDYMMDSHQFLYYYDVLGSVNGLVCFALQS 64
             F     Y + ++  D    I  GY  K   Y  D  +F      +GS NGL+C A + 
Sbjct: 64  TSFSLPSVYSVGYEASDRAIAIKLGYPLKSDCY--DEVKF------IGSCNGLLCVASE- 114

Query: 63  WRYTNYSSPFFICNPITRA 7
                      + NP TRA
Sbjct: 115 ------PGVLLLLNPSTRA 127