BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033492
         (1323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EEE66057.1| hypothetical protein OsJ_22054 [Oryza sativa Japo...   139   8e-54
ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839...   102   2e-49
ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group] g...   123   7e-44
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...   130   1e-43
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...   124   3e-42

>gb|EEE66057.1| hypothetical protein OsJ_22054 [Oryza sativa Japonica Group]
          Length = 940

 Score =  139 bits (350), Expect(3) = 8e-54
 Identities = 66/192 (34%), Positives = 112/192 (58%)
 Frame = -3

Query: 1087 FSNQWVQRIMFCITTATYAVMVNGSTSGYFKATCGIRQGDPMSPYIFISCAEVLALKLHH 908
            F++ W+Q +M C+T+  YAV +NG  +     + G+RQGDP+SPY+F+ C E L+  L  
Sbjct: 228  FADPWIQTVMRCVTSVRYAVRINGELTYPVTPSRGLRQGDPISPYLFLLCTEGLSSILQK 287

Query: 907  LMEHKALRGIKIAKNTPELTRLMYADDLLIFAKADLEEAQNIDLALQTYCNSSGQRINMT 728
                  ++GI+     P ++ L++ADD + FA++DL   Q +  ALQ YC +SGQ+IN+ 
Sbjct: 288  KESMGVIQGIRNGHLGPPISHLLFADDSIFFARSDLHSVQGLKDALQAYCKASGQKINLQ 347

Query: 727  KYQLIHHKQIPRRLLSIIHDVHKVSCTTSFPNYLGVPSVLGRATMDKFSPLIQRFQTRLS 548
            K  +   +  P  + + + +  +VS       YLG+P+ +GRA++  F  L +R   R++
Sbjct: 348  KSSIFFGQNCPEEIKNSVKETLQVSVEILQDTYLGMPTEIGRASIGSFLFLPERVWRRVN 407

Query: 547  GWKSSSLSKEGR 512
            GW    +S+ G+
Sbjct: 408  GWNDRPMSRAGK 419



 Score = 73.6 bits (179), Expect(3) = 8e-54
 Identities = 45/138 (32%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
 Frame = -1

Query: 417 MKAKYFPHGYFMKSKCPRTSSSVWKSI---HHVLAFGLQWHIGDGLSVRAWLDSWVPDTP 247
           +K +YFP+  F  +  P  +S  W+SI     +L  G++W IG+G SV+   D W+P   
Sbjct: 458 LKGRYFPNSDFWNAPKPTAASFTWRSILFGRDLLRKGVRWGIGNGSSVKILKDHWIPGIK 517

Query: 246 FPM--PLLPQPQGCLQDRVSDF-IDLVHRCWCQELVLAYWQPMYADRILSMPLSLSAHED 76
             M  PLLP P     D   DF ++     W ++ V +++    A +IL +P+S    ED
Sbjct: 518 PSMVRPLLPMPD----DVTVDFLVNAAIGEWDEDKVFSFFDETTAQQILQIPVSAHGGED 573

Query: 75  SQFWAPHKHCIYTVKSAY 22
              W   K  +++V+SAY
Sbjct: 574 FISWPHDKRGVFSVRSAY 591



 Score = 46.6 bits (109), Expect(3) = 8e-54
 Identities = 25/62 (40%), Positives = 37/62 (59%)
 Frame = -1

Query: 1269 QSAFLLGGMIHDNVLLAREAFHQIRAKKNRNSQFCALKFDLQKA*DKLELSFIEAVVTSF 1090
            QSAF+ G +I D+ L++ E  H I+ K+     F ALK D+ KA D++E SF+   +   
Sbjct: 168  QSAFVPGRLITDSALVSYECLHSIK-KQQCKKPFFALKVDMMKAYDRVEWSFLHGCLLKL 226

Query: 1089 GF 1084
            GF
Sbjct: 227  GF 228


>ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839353 [Brachypodium
            distachyon]
          Length = 1236

 Score =  102 bits (254), Expect(4) = 2e-49
 Identities = 61/195 (31%), Positives = 103/195 (52%)
 Frame = -3

Query: 1096 QFWFSNQWVQRIMFCITTATYAVMVNGSTSGYFKATCGIRQGDPMSPYIFISCAEVLALK 917
            +F F  +WV  IM C+ +  Y V VNG     F+ T G+RQGDP+SP++F+   + L+  
Sbjct: 207  KFGFDVKWVNWIMSCVRSVRYDVKVNGHILESFRPTRGLRQGDPLSPFLFLFVVDGLSSL 266

Query: 916  LHHLMEHKALRGIKIAKNTPELTRLMYADDLLIFAKADLEEAQNIDLALQTYCNSSGQRI 737
                +E+  L  +K+A+  P ++ L++ADD L+F +A  ++A  I   L +Y + +GQ +
Sbjct: 267  FGKEIENANLSVLKMARRGPGISHLLFADDSLLFFQARHDQALIIKGILDSYESCTGQLL 326

Query: 736  NMTKYQLIHHKQIPRRLLSIIHDVHKVSCTTSFPNYLGVPSVLGRATMDKFSPLIQRFQT 557
              +K  ++  K +P+   + +  V  VS       YLG+P   GR     F  +  + + 
Sbjct: 327  GPSKCSILLGKNVPQVKGAAVTAVLNVSNMAFEEKYLGLPVPEGRMKNGCFQFVKDKARK 386

Query: 556  RLSGWKSSSLSKEGR 512
            RL+ W    LS  G+
Sbjct: 387  RLNDWSEKYLSAGGK 401



 Score = 87.0 bits (214), Expect(4) = 2e-49
 Identities = 57/168 (33%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
 Frame = -1

Query: 501 KDLDVQNVALLGKQAWSLL-KPTSLWTKYMKAKYFPHGYFMKSKCPRTSSSVWKSIHHVL 325
           K L      +L K AW LL KP +L  + +K+KY+P+G  + +   +++S VW+ I HVL
Sbjct: 394 KYLSAGGKEVLIKSAWRLLDKPDNLCARLIKSKYYPNGNLLDTTFIQSASPVWQGITHVL 453

Query: 324 AF---GLQWHIGDGLSVRAWLDSWVPDTPFPMPLLPQPQGCLQD----RVSDFIDLVHRC 166
                G  W IG+G +V  W  +W+P          +P G + +    RVSD I+     
Sbjct: 454 ELLKKGYFWRIGNGYTVDIWRHNWLPRGNL------RPSGRMGNSRLRRVSDLINQDSGT 507

Query: 165 WCQELVLAYWQPMYADRILSMPLSLSAHEDSQFWAPHKHCIYTVKSAY 22
           W + L+   +    AD I  + L ++ H+D   W P K  I+TVKSAY
Sbjct: 508 WNEPLIRRIFYLHDADMITILKLPVNQHDDVLAWFPDKLGIFTVKSAY 555



 Score = 54.7 bits (130), Expect(4) = 2e-49
 Identities = 27/62 (43%), Positives = 40/62 (64%)
 Frame = -1

Query: 1269 QSAFLLGGMIHDNVLLAREAFHQIRAKKNRNSQFCALKFDLQKA*DKLELSFIEAVVTSF 1090
            QSAF+ G MI DN ++A E  H ++  +N   +FCA K DL KA D+++  ++EA +  F
Sbjct: 150  QSAFVPGRMITDNAIIAFECIHALQHGEN-TGKFCAYKLDLAKAYDRVDWGYLEATLCKF 208

Query: 1089 GF 1084
            GF
Sbjct: 209  GF 210



 Score = 21.2 bits (43), Expect(4) = 2e-49
 Identities = 5/18 (27%), Positives = 15/18 (83%)
 Frame = -2

Query: 1322 RIISKIMVKRMRPLISLV 1269
            ++++K +  R+RPL++++
Sbjct: 128  KVVAKCLANRLRPLLNVL 145


>ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group]
            gi|255676397|dbj|BAH93171.1| Os05g0434000 [Oryza sativa
            Japonica Group]
          Length = 1478

 Score =  123 bits (309), Expect(3) = 7e-44
 Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 3/195 (1%)
 Frame = -3

Query: 1087 FSNQWVQRIMFCITTATYAVMVNGSTSGYFKATCGIRQGDPMSPYIFISCAEVLALKLHH 908
            F +QWV  +M C+T+ TY + +NG  S       G+RQGDP+SPY+FI CAE L+  L  
Sbjct: 946  FHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQK 1005

Query: 907  LMEHKALRGIKIAKNTPELTRLMYADDLLIFAKADLEEAQNIDLALQTYCNSSGQRINMT 728
                  + GIK+ ++TP +  L +ADD L+  +A   +AQ +   L  Y  +SGQ IN  
Sbjct: 1006 AQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQVINKD 1065

Query: 727  KYQLIHHKQIPRRLLSIIHDVHKVSC---TTSFPNYLGVPSVLGRATMDKFSPLIQRFQT 557
            K  ++     P  L S   +V    C         YLG+P  +G++    F  + ++   
Sbjct: 1066 KSSVLFS---PNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVWL 1122

Query: 556  RLSGWKSSSLSKEGR 512
            R+ GW+   LSK G+
Sbjct: 1123 RIQGWQEKLLSKAGK 1137



 Score = 56.6 bits (135), Expect(3) = 7e-44
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
 Frame = -1

Query: 426  TKYMKAKYFPHGYFMKSKCPRTSSSVWKSIHH---VLAFGLQWHIGDGLSVRAWLDSWVP 256
            TK +KAKYF  G  ++       S  W+SI     ++  GL W +G G +V  W D W+P
Sbjct: 1159 TKVLKAKYFLDGSILQCAPRDGISYTWRSILKGVDLIKEGLVWRVGTGENVNIWNDPWMP 1218

Query: 255  DTPFPMPLLPQPQGCLQDRVSDFIDLVHRCWCQELVLAYWQPMYADRILSMPLSLSAHED 76
                  P+ P+    L  +V + ID     W ++LV   + P  A  IL+  +  +  ED
Sbjct: 1219 VGFTRRPITPRGNSIL-TKVVELIDPGTGWWDEQLVNDLFWPEDAATILATHVDENL-ED 1276

Query: 75   SQFWAPHKHCIYTVKSAY 22
               W      +++VKSAY
Sbjct: 1277 WPTWHFDSKGLFSVKSAY 1294



 Score = 45.8 bits (107), Expect(3) = 7e-44
 Identities = 24/64 (37%), Positives = 36/64 (56%)
 Frame = -1

Query: 1275 PRQSAFLLGGMIHDNVLLAREAFHQIRAKKNRNSQFCALKFDLQKA*DKLELSFIEAVVT 1096
            P QSAF+   +I  NVLLA E  H +  +K   +   A+K D+ KA D++E  F+  ++ 
Sbjct: 883  PSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMML 942

Query: 1095 SFGF 1084
              GF
Sbjct: 943  RLGF 946


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score =  130 bits (328), Expect(3) = 1e-43
 Identities = 67/192 (34%), Positives = 108/192 (56%)
 Frame = -3

Query: 1087 FSNQWVQRIMFCITTATYAVMVNGSTSGYFKATCGIRQGDPMSPYIFISCAEVLALKLHH 908
            F ++W + IM C+ +  Y+V++NG   G      G+RQGDP+SPY+FI CAE L+  +  
Sbjct: 1022 FCSKWSEWIMMCVESVDYSVILNGEKIGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRQ 1081

Query: 907  LMEHKALRGIKIAKNTPELTRLMYADDLLIFAKADLEEAQNIDLALQTYCNSSGQRINMT 728
                  + G KI KN P ++ L++ADD  +F KA   +AQ +   L+ Y +SSGQ IN  
Sbjct: 1082 AEGSGTISGAKICKNAPIISHLLFADDCFLFFKAKSGQAQGMKNILEMYESSSGQSINFQ 1141

Query: 727  KYQLIHHKQIPRRLLSIIHDVHKVSCTTSFPNYLGVPSVLGRATMDKFSPLIQRFQTRLS 548
            K ++ + + +   + + I  +  V        YLGVPS++GR+ +  F  + +R   +++
Sbjct: 1142 KSEVFYSRNVDDAVKASISQILGVQQVMGTGKYLGVPSMVGRSRISTFKFVKERVWKKIN 1201

Query: 547  GWKSSSLSKEGR 512
             W S  LS+ GR
Sbjct: 1202 SWSSKCLSQAGR 1213



 Score = 72.0 bits (175), Expect(3) = 1e-43
 Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
 Frame = -1

Query: 522  RKGGLGIKDLDVQNVALLGKQAWSLL-KPTSLWTKYMKAKYFPHGYFMKSKCPRTSSSVW 346
            ++GGLG K+L   N  +LGKQAW  + +P ++ T+  KAKYF    F+ SK     S VW
Sbjct: 1251 KEGGLGFKNLRAFNEGMLGKQAWKFMTEPHNIVTRLFKAKYFNKCDFLDSKIGHNPSYVW 1310

Query: 345  KSI---HHVLAFGLQWHIGDGLSVRAWLDSWVPDTPFPMPLLPQPQGCLQDRVSDFIDLV 175
            ++I     V++ G +W IG G  +  W   W+ D          P+   +  V+D     
Sbjct: 1311 RNIWGAKRVVSEGYKWSIGSGTDICVWDQRWLVDGGVLQKPESLPEEFKELTVADLFISQ 1370

Query: 174  HRCWCQELVLAYWQPMYADRILSMPL----SLSAHED 76
             R W   L+         +RIL+ P+     LS H D
Sbjct: 1371 TRFWNVGLLRNLVSNEDTNRILNTPIFEPNHLSQHVD 1407



 Score = 22.3 bits (46), Expect(3) = 1e-43
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = -1

Query: 1269 QSAFLLGGMIHDNVLLAREAFHQIRAKKNRNSQFCALKFDLQKA*DKLELSFIEAVVTSF 1090
            QSAF+    I DN L A E  H I+               +  A D++   ++ +++   
Sbjct: 975  QSAFVPERSILDNALAAIEIVHYIQY--------------ISTAYDRINWEYLRSIMGKM 1020

Query: 1089 GF 1084
            GF
Sbjct: 1021 GF 1022


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score =  124 bits (310), Expect(3) = 3e-42
 Identities = 65/198 (32%), Positives = 115/198 (58%), Gaps = 1/198 (0%)
 Frame = -3

Query: 1105 SCYQ-FWFSNQWVQRIMFCITTATYAVMVNGSTSGYFKATCGIRQGDPMSPYIFISCAEV 929
            SC Q F F +  ++ IM C+T++T++V+ NG+     K T G+RQGDP+SPY+FI C E 
Sbjct: 153  SCLQDFGFPDDTIKLIMHCVTSSTFSVLWNGNKWPPIKPTHGLRQGDPLSPYLFIICMEK 212

Query: 928  LALKLHHLMEHKALRGIKIAKNTPELTRLMYADDLLIFAKADLEEAQNIDLALQTYCNSS 749
            L+L ++  +       I+++ ++P L+ L++ADD+L+F KA   + + I      +  + 
Sbjct: 213  LSLAINKAVHEGEWEPIRMSASSPPLSHLLFADDVLLFTKAKNSQLRFIKDLFDRFSKAL 272

Query: 748  GQRINMTKYQLIHHKQIPRRLLSIIHDVHKVSCTTSFPNYLGVPSVLGRATMDKFSPLIQ 569
            G +IN++K +   +  +P + +  +  +  +  TTS   YLG P + GR     F  +I+
Sbjct: 273  GLKINLSKSRAF-YSGVPHQKIINLTSISGIRSTTSLGKYLGFPILKGRPKRSDFLFIIE 331

Query: 568  RFQTRLSGWKSSSLSKEG 515
            + + RL+ WK+  L+K G
Sbjct: 332  KMRNRLATWKNKLLNKAG 349



 Score = 52.0 bits (123), Expect(3) = 3e-42
 Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
 Frame = -1

Query: 516 GGLGIKDLDVQNVALLGKQAWSLL-KPTSLWTKYMKAKYFPHGYFMKSKCPRTSSSVWKS 340
           GGLGIK     N  LLGK  W L      LW   + AKY      + +    +SS +W S
Sbjct: 370 GGLGIKSAREANTCLLGKLVWELFHNKHKLWVSLLAAKYTAGPNLLNASITSSSSPIWSS 429

Query: 339 I---HHVLAFGLQWHIGDGLSVRAWLDSW 262
           I    +VL  G  W  G G S   W   W
Sbjct: 430 IIRAKNVLISGYSWRPGSG-SSSFWFTHW 457



 Score = 44.3 bits (103), Expect(3) = 3e-42
 Identities = 24/64 (37%), Positives = 35/64 (54%)
 Frame = -1

Query: 1275 PRQSAFLLGGMIHDNVLLAREAFHQIRAKKNRNSQFCALKFDLQKA*DKLELSFIEAVVT 1096
            P QS+FL G    DN ++ +E  H +R  K R   + A K DL+KA D +   F+ + + 
Sbjct: 98   PYQSSFLQGRGTSDNSIVLQEIVHFMRRSK-RKKGYVAFKLDLEKAFDNVNWEFLRSCLQ 156

Query: 1095 SFGF 1084
             FGF
Sbjct: 157  DFGF 160