BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033484
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
emb|CBI40338.3| unnamed protein product [Vitis vinifera]              136   2e-30
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]   136   2e-30
ref|XP_002318314.1| predicted protein [Populus trichocarpa] gi|2...   130   9e-29
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...   125   3e-27

>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  136 bits (342), Expect = 2e-30
 Identities = 67/94 (71%), Positives = 78/94 (82%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAF 107
           D VSLVNVLPACASVGA  +GKQVHGYA+RS LFEDVFVGNAVVDMY KCG++ EA K F
Sbjct: 230 DAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVF 289

Query: 106 DTMEDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + M+ KDVVSWNA+VT YSQ G F +A+ L E++
Sbjct: 290 ERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 323



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = -3

Query: 262 LPACASVGALMQGKQVHGYAVRSCLFED--VFVGNAVVDMYGKCGIIGEAKKAFDTMEDK 89
           L ACA +GAL  G+Q+H Y +R+  FE   +FV N ++DMY K G +  A+  FD M  +
Sbjct: 486 LMACARLGALRFGRQIHAYVLRN-RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 544

Query: 88  DVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + VSW +L+T Y   G   EA+++  EM
Sbjct: 545 NGVSWTSLMTGYGMHGRGEEALQIFYEM 572



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = -3

Query: 265 VLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAFDTMEDK- 89
           VL AC  + +   G  VH     S    +VFVGN +V MYG+CG    A++ FD M ++ 
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 191

Query: 88  --DVVSWNALVTVYSQSGSFGEAMELIEEM 5
             D+VSWN++V  Y Q G    AM++ E M
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERM 221



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 9/103 (8%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCL-------FEDVFVGNAVVDMYGKCGII 128
           +VV+LV++L  CA  G L+ GK+ H +A++  L        +D+ V NA++DMY KC   
Sbjct: 366 NVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSP 425

Query: 127 GEAKKAFDTM--EDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
             A+  FD +  +D+ VV+W  L+   +Q G   EA+EL  +M
Sbjct: 426 KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 468


>emb|CBI40338.3| unnamed protein product [Vitis vinifera]
          Length = 487

 Score =  136 bits (342), Expect = 2e-30
 Identities = 67/94 (71%), Positives = 78/94 (82%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAF 107
           D VSLVNVLPACASVGA  +GKQVHGYA+RS LFEDVFVGNAVVDMY KCG++ EA K F
Sbjct: 230 DAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVF 289

Query: 106 DTMEDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + M+ KDVVSWNA+VT YSQ G F +A+ L E++
Sbjct: 290 ERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 323



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = -3

Query: 265 VLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAFDTMEDK- 89
           VL AC  + +   G  VH     S    +VFVGN +V MYG+CG    A++ FD M ++ 
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 191

Query: 88  --DVVSWNALVTVYSQSGSFGEAMELIEEM 5
             D+VSWN++V  Y Q G    AM++ E M
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERM 221


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  136 bits (342), Expect = 2e-30
 Identities = 67/94 (71%), Positives = 78/94 (82%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAF 107
           D VSLVNVLPACASVGA  +GKQVHGYA+RS LFEDVFVGNAVVDMY KCG++ EA K F
Sbjct: 249 DAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVF 308

Query: 106 DTMEDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + M+ KDVVSWNA+VT YSQ G F +A+ L E++
Sbjct: 309 ERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 342



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = -3

Query: 262 LPACASVGALMQGKQVHGYAVRSCLFED--VFVGNAVVDMYGKCGIIGEAKKAFDTMEDK 89
           L ACA +GAL  G+Q+H Y +R+  FE   +FV N ++DMY K G +  A+  FD M  +
Sbjct: 505 LMACARLGALRFGRQIHAYVLRN-RFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 563

Query: 88  DVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + VSW +L+T Y   G   EA+++  EM
Sbjct: 564 NGVSWTSLMTGYGMHGRGEEALQIFYEM 591



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
 Frame = -3

Query: 265 VLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAFDTMEDK- 89
           VL AC  + +   G  VH     S    +VFVGN +V MYG+CG    A++ FD M ++ 
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 210

Query: 88  --DVVSWNALVTVYSQSGSFGEAMELIEEM 5
             D+VSWN++V  Y Q G    AM++ E M
Sbjct: 211 VGDLVSWNSIVAAYMQGGDSIRAMKMFERM 240



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCL-------FEDVFVGNAVVDMYGKCGII 128
           +VV+LV++L  CAS G L+ GK+ H +A++  L        +D+ V NA++DMY KC   
Sbjct: 385 NVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSP 444

Query: 127 GEAKKAFDTM--EDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
             A+  FD +  +D+ VV+W  L+   +Q G   EA+EL  +M
Sbjct: 445 KAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 487


>ref|XP_002318314.1| predicted protein [Populus trichocarpa] gi|222858987|gb|EEE96534.1|
           predicted protein [Populus trichocarpa]
          Length = 539

 Score =  130 bits (328), Expect = 9e-29
 Identities = 63/94 (67%), Positives = 76/94 (80%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAF 107
           DVVSLVNVLPACAS+GA + GK VHG AVRS  FED+FVGNA+VDMY KCG++ EA K F
Sbjct: 12  DVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVF 71

Query: 106 DTMEDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
           D +++KDVVSWNA+V  YSQ G F +A+ L E+M
Sbjct: 72  DRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKM 105



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
 Frame = -3

Query: 262 LPACASVGALMQGKQVHGYAVRSCLFEDVF--VGNAVVDMYGKCGIIGEAKKAFDTMEDK 89
           L ACA + AL  G+Q+H Y +R+  F+  F  V N ++DMY K G I  A+  FD ++ K
Sbjct: 173 LIACARLAALRLGRQIHAYILRNH-FDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQK 231

Query: 88  DVVSWNALVTVYSQSGSFGEAMELIEEM 5
           + VSW +L+T Y   G   EA+E+ +EM
Sbjct: 232 NFVSWTSLMTGYGMHGRGKEALEVFDEM 259


>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score =  125 bits (315), Expect = 3e-27
 Identities = 61/94 (64%), Positives = 74/94 (78%)
 Frame = -3

Query: 286 DVVSLVNVLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAF 107
           D VSLVNVLPACAS+G  + GKQVHG+A+R  LFEDVFV N++VDMY KCG++  A K F
Sbjct: 245 DAVSLVNVLPACASMGDWLCGKQVHGFAIRYGLFEDVFVANSLVDMYAKCGLMCIANKVF 304

Query: 106 DTMEDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
           D M+ KDVVSWNA+VT YSQ G F +A+ L E+M
Sbjct: 305 DRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKM 338



 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 38/101 (37%), Positives = 65/101 (64%), Gaps = 9/101 (8%)
 Frame = -3

Query: 280 VSLVNVLPACASVGALMQGKQVHGYAVRSCL-------FEDVFVGNAVVDMYGKCGIIGE 122
           V+LV++L  CASVGAL+ GK+ H Y+++  L        +++ V NA++DMY KC  I  
Sbjct: 383 VTLVSLLSGCASVGALLHGKETHCYSIKCVLNFDRSDPRDELLVVNAIIDMYTKCKDINV 442

Query: 121 AKKAFDTM--EDKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
            +  F+++  +D++VV+W A++  Y+Q G   +A+EL  +M
Sbjct: 443 GRAIFNSIPPKDRNVVTWTAMIGGYAQHGEANDALELFSQM 483



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = -3

Query: 262 LPACASVGALMQGKQVHGYAVRSCLFEDV-FVGNAVVDMYGKCGIIGEAKKAFDTMEDKD 86
           L ACA + AL  G+Q+H + +R     DV +V N ++DMY K G +  A+  FD M+ ++
Sbjct: 502 LMACARLAALRFGRQIHAFVLRDQYDCDVLYVANCLIDMYSKSGDMDAARLVFDNMKHRN 561

Query: 85  VVSWNALVTVYSQSGSFGEAMELIEEM 5
            VSW +L+T Y   G   EA+++ +EM
Sbjct: 562 TVSWTSLMTGYGMHGHGEEAIKVFDEM 588



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = -3

Query: 265 VLPACASVGALMQGKQVHGYAVRSCLFEDVFVGNAVVDMYGKCGIIGEAKKAFDTM---E 95
           V  AC  + + + G  +H     +    +VFV NAVV MYG+CG    A++ FD +   E
Sbjct: 145 VFKACGELPSFLHGSCIHAIVCSTGFDSNVFVCNAVVAMYGRCGASSYARQMFDELLMGE 204

Query: 94  DKDVVSWNALVTVYSQSGSFGEAMELIEEM 5
             D+VSWN+++ VY QSG     +EL   M
Sbjct: 205 VFDLVSWNSMIAVYLQSGDLKSGIELFRRM 234