BLASTX nr result

ID: Coptis23_contig00033458 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033458
         (442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27927.3| unnamed protein product [Vitis vinifera]              109   3e-22
ref|XP_002279729.1| PREDICTED: uncharacterized protein LOC100262...   109   3e-22
ref|XP_002514143.1| conserved hypothetical protein [Ricinus comm...   106   2e-21
ref|XP_002308297.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
ref|NP_194685.1| uncharacterized protein [Arabidopsis thaliana] ...    81   8e-14

>emb|CBI27927.3| unnamed protein product [Vitis vinifera]
          Length = 500

 Score =  109 bits (272), Expect = 3e-22
 Identities = 58/131 (44%), Positives = 76/131 (58%)
 Frame = +1

Query: 1   MEAWVPLFNIFLNSPTPESEASFWFQHXXXXXXXXXXXXXXXXXXXXXKPIDVTIINXXX 180
           MEAWVPLF+IF+NSP+PE EAS W Q                      KP D  + +   
Sbjct: 1   MEAWVPLFDIFMNSPSPEFEASLWLQQSFNASSATTITTGSFLSLLT-KPCDAVVSDSS- 58

Query: 181 XXXXXXLPAHHSKSVMWIQTLPNAVQMRILSFLRVERRRFCKKELCSLANNILKENQELD 360
                   +  +K VMW+QTLPN VQ RILSFL +E++RFC ++L  LA N+L  + E++
Sbjct: 59  --------SPSTKRVMWVQTLPNVVQSRILSFLALEKQRFCSRDLSRLARNVLSGDGEVE 110

Query: 361 FWVKKAACNLL 393
           FWVK+ A NLL
Sbjct: 111 FWVKRGARNLL 121


>ref|XP_002279729.1| PREDICTED: uncharacterized protein LOC100262802 [Vitis vinifera]
          Length = 491

 Score =  109 bits (272), Expect = 3e-22
 Identities = 58/131 (44%), Positives = 76/131 (58%)
 Frame = +1

Query: 1   MEAWVPLFNIFLNSPTPESEASFWFQHXXXXXXXXXXXXXXXXXXXXXKPIDVTIINXXX 180
           MEAWVPLF+IF+NSP+PE EAS W Q                      KP D  + +   
Sbjct: 1   MEAWVPLFDIFMNSPSPEFEASLWLQQSFNASSATTITTGSFLSLLT-KPCDAVVSDSS- 58

Query: 181 XXXXXXLPAHHSKSVMWIQTLPNAVQMRILSFLRVERRRFCKKELCSLANNILKENQELD 360
                   +  +K VMW+QTLPN VQ RILSFL +E++RFC ++L  LA N+L  + E++
Sbjct: 59  --------SPSTKRVMWVQTLPNVVQSRILSFLALEKQRFCSRDLSRLARNVLSGDGEVE 110

Query: 361 FWVKKAACNLL 393
           FWVK+ A NLL
Sbjct: 111 FWVKRGARNLL 121


>ref|XP_002514143.1| conserved hypothetical protein [Ricinus communis]
           gi|223546599|gb|EEF48097.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 493

 Score =  106 bits (265), Expect = 2e-21
 Identities = 62/147 (42%), Positives = 79/147 (53%)
 Frame = +1

Query: 1   MEAWVPLFNIFLNSPTPESEASFWFQHXXXXXXXXXXXXXXXXXXXXXKPIDVTIINXXX 180
           ME W+PLF+IFLNS TPE+EAS W                        KPI+ +I +   
Sbjct: 1   MERWIPLFDIFLNSSTPETEASIWLNQSFSASSPSSPITTASFLSLLTKPINASITSSSP 60

Query: 181 XXXXXXLPAHHSKSVMWIQTLPNAVQMRILSFLRVERRRFCKKELCSLANNILKENQELD 360
                  PA  +K +M+IQTLP+ VQ RILSFL  E  RFCK++L  LA NIL +N  +D
Sbjct: 61  -------PA--TKRIMFIQTLPDMVQSRILSFLAFEHERFCKRKLSRLATNILTDNLGID 111

Query: 361 FWVKKAACNLLXXXXXXXXXXXXGMSL 441
           FWVK+AA ++L            G SL
Sbjct: 112 FWVKRAAHDVLDQISESNYEWISGFSL 138


>ref|XP_002308297.1| predicted protein [Populus trichocarpa] gi|222854273|gb|EEE91820.1|
           predicted protein [Populus trichocarpa]
          Length = 488

 Score =  102 bits (255), Expect = 3e-20
 Identities = 61/147 (41%), Positives = 78/147 (53%)
 Frame = +1

Query: 1   MEAWVPLFNIFLNSPTPESEASFWFQHXXXXXXXXXXXXXXXXXXXXXKPIDVTIINXXX 180
           MEAWVPLFNIFLNSPTPE+EAS W +                        +   IIN   
Sbjct: 1   MEAWVPLFNIFLNSPTPETEASLWLEQSSSSSSVPITTTSFLSL------LAEPIINN-- 52

Query: 181 XXXXXXLPAHHSKSVMWIQTLPNAVQMRILSFLRVERRRFCKKELCSLANNILKENQELD 360
                   +  ++ VM++QTLP  VQ RILSFL  E +RFCK++L  LA  +L + + +D
Sbjct: 53  --------SSTNRRVMFLQTLPFLVQSRILSFLGFEHQRFCKRDLSKLARTLLTDTEGID 104

Query: 361 FWVKKAACNLLXXXXXXXXXXXXGMSL 441
           FWVK+AA NLL            G+SL
Sbjct: 105 FWVKRAARNLLDKVSDSNYQWISGLSL 131


>ref|NP_194685.1| uncharacterized protein [Arabidopsis thaliana]
           gi|5123550|emb|CAB45316.1| hypothetical protein
           [Arabidopsis thaliana] gi|7269855|emb|CAB79714.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|23297599|gb|AAN12988.1| unknown protein [Arabidopsis
           thaliana] gi|332660245|gb|AEE85645.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 493

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 50/133 (37%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
 Frame = +1

Query: 1   MEAWVPLFNIFLNSPTPESEASFWFQHXXXXXXXXXXXXXXXXXXXXXKPIDVTIINXXX 180
           ME W+PLF+IFL SP+PE+EAS W                         PI+ +      
Sbjct: 1   MEEWIPLFDIFLKSPSPEAEASLWLDQASNLFSSSSSAAA---------PINRSSFVSLL 51

Query: 181 XXXXXXLPAHHSKSVMWIQTLPNAVQMRILSFLRVERRRFCKKELCSLANNILKE--NQE 354
                   +  +K V++I+TLPN VQ +ILSFL  E +RFC  +L  LA  +L    N+ 
Sbjct: 52  KKQCDQNSSPVTKKVLFIETLPNMVQSKILSFLLFEYQRFCVSDLVWLAREMLGSGGNKV 111

Query: 355 LDFWVKKAACNLL 393
           +DFWV++ A NLL
Sbjct: 112 VDFWVQRDAHNLL 124


Top