BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033436
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabi...    77   1e-12
ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arab...    77   1e-12
ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arab...    77   2e-12
ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsi...    76   3e-12
gb|AFK35032.1| unknown [Lotus japonicus] gi|388511495|gb|AFK4380...    76   3e-12

>ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
           gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein
           [Arabidopsis thaliana] gi|21592388|gb|AAM64339.1|
           Sm-like protein [Arabidopsis thaliana]
           gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis
           thaliana] gi|332197775|gb|AEE35896.1| U6
           snRNA-associated Sm-like protein LSm3 [Arabidopsis
           thaliana]
          Length = 98

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = -2

Query: 319 ITTVEIDDETYEEIVRTTKRNVQYLFVKGDGVILVSPPLRT 197
           ITTVEIDDETYEEIVRTTKR +++LFV+GDGVILVSPPLRT
Sbjct: 56  ITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96


>ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
           lyrata] gi|297334947|gb|EFH65365.1| hypothetical protein
           ARALYDRAFT_895567 [Arabidopsis lyrata subsp. lyrata]
          Length = 98

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/41 (87%), Positives = 40/41 (97%)
 Frame = -2

Query: 319 ITTVEIDDETYEEIVRTTKRNVQYLFVKGDGVILVSPPLRT 197
           ITTVEIDDETYEEIVRTTKR +++LFV+GDGVILVSPPLRT
Sbjct: 56  ITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRT 96


>ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
           lyrata] gi|297338998|gb|EFH69415.1| hypothetical protein
           ARALYDRAFT_472357 [Arabidopsis lyrata subsp. lyrata]
          Length = 98

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/41 (90%), Positives = 39/41 (95%)
 Frame = -2

Query: 319 ITTVEIDDETYEEIVRTTKRNVQYLFVKGDGVILVSPPLRT 197
           ITTVEIDDETYEEIVRTTKR V +LFV+GDGVILVSPPLRT
Sbjct: 56  ITTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96


>ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
           gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity
           to Lsm3 protein from Homo sapiens gb|AJ238095 and
           contains a conserved Sm protein PF|01423 motif. EST
           gb|AI998441 comes from this gene [Arabidopsis thaliana]
           gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein
           [Arabidopsis thaliana] gi|332191952|gb|AEE30073.1| U6
           snRNA-associated Sm-like protein [Arabidopsis thaliana]
          Length = 97

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = -2

Query: 319 ITTVEIDDETYEEIVRTTKRNVQYLFVKGDGVILVSPPLRT 197
           ITT+EIDDETYEEIVRTTKR V +LFV+GDGVILVSPPLRT
Sbjct: 56  ITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96


>gb|AFK35032.1| unknown [Lotus japonicus] gi|388511495|gb|AFK43809.1| unknown
           [Lotus japonicus]
          Length = 97

 Score = 76.3 bits (186), Expect = 3e-12
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = -2

Query: 319 ITTVEIDDETYEEIVRTTKRNVQYLFVKGDGVILVSPPLRT 197
           +TTVEIDDETYEEIVRTTKR V +LFV+GDGVILVSPPLRT
Sbjct: 56  VTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96