BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033301
         (645 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              260   1e-67
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   260   1e-67
gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygr...   150   3e-34
ref|XP_001773953.1| predicted protein [Physcomitrella patens sub...   149   4e-34
ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containi...   145   5e-33

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  260 bits (665), Expect = 1e-67
 Identities = 130/214 (60%), Positives = 164/214 (76%)
 Frame = -3

Query: 643  YPFKAIELFKQMCWRKKLPDSSTLTSILKAYAQMRLVDEAFRLFGSIDKLYGIEPSIEHY 464
            +P +A+ L  QM W+ K  D ST  S+L A AQM LVDEAFRLF S+ ++YGIEP  EHY
Sbjct: 645  HPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLFFSMKEVYGIEPLEEHY 704

Query: 463  SCMIEVLGRAGKFKNAQEFIDASIPFDPVPLVWNTLLSASRIHGNMRVAKYAAEKLLDLE 284
            SCM+EVLGRAG F+   +FI+    F   PL+W TLLS+SRIHGNM+VA+YAAEKLL+LE
Sbjct: 705  SCMVEVLGRAGMFEEVLDFINGVPTFKLGPLIWRTLLSSSRIHGNMKVAQYAAEKLLELE 764

Query: 283  KNNLTANVLLEQVLLTEGMWDDASKLKIKYKFSRGNCSWIEIRNNVHEFTSDQILTEDIS 104
             ++ +AN+LLEQVLLT G WD+A KLK K K  R + SWIEIRN ++EF SD+   +++S
Sbjct: 765  PSDFSANLLLEQVLLTLGEWDNALKLKTKTKSMRASSSWIEIRNRIYEFASDENPAKEVS 824

Query: 103  SKLVEMEIFMEEMGYVADRNHLLHNAEEEGYEGV 2
            +KL E+E  MEE+GYVAD+NHLLHNAEEE Y+GV
Sbjct: 825  AKLAEIEGKMEELGYVADKNHLLHNAEEEEYDGV 858


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 906

 Score =  260 bits (665), Expect = 1e-67
 Identities = 130/214 (60%), Positives = 164/214 (76%)
 Frame = -3

Query: 643  YPFKAIELFKQMCWRKKLPDSSTLTSILKAYAQMRLVDEAFRLFGSIDKLYGIEPSIEHY 464
            +P +A+ L  QM W+ K  D ST  S+L A AQM LVDEAFRLF S+ ++YGIEP  EHY
Sbjct: 621  HPSEALNLISQMRWKNKPADQSTFRSVLNACAQMGLVDEAFRLFFSMKEVYGIEPLEEHY 680

Query: 463  SCMIEVLGRAGKFKNAQEFIDASIPFDPVPLVWNTLLSASRIHGNMRVAKYAAEKLLDLE 284
            SCM+EVLGRAG F+   +FI+    F   PL+W TLLS+SRIHGNM+VA+YAAEKLL+LE
Sbjct: 681  SCMVEVLGRAGMFEEVLDFINGVPTFKLGPLIWRTLLSSSRIHGNMKVAQYAAEKLLELE 740

Query: 283  KNNLTANVLLEQVLLTEGMWDDASKLKIKYKFSRGNCSWIEIRNNVHEFTSDQILTEDIS 104
             ++ +AN+LLEQVLLT G WD+A KLK K K  R + SWIEIRN ++EF SD+   +++S
Sbjct: 741  PSDFSANLLLEQVLLTLGEWDNALKLKTKTKSMRASSSWIEIRNRIYEFASDENPAKEVS 800

Query: 103  SKLVEMEIFMEEMGYVADRNHLLHNAEEEGYEGV 2
            +KL E+E  MEE+GYVAD+NHLLHNAEEE Y+GV
Sbjct: 801  AKLAEIEGKMEELGYVADKNHLLHNAEEEEYDGV 834


>gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  150 bits (378), Expect = 3e-34
 Identities = 86/217 (39%), Positives = 121/217 (55%), Gaps = 8/217 (3%)
 Frame = -3

Query: 634  KAIELFKQMCWRKKLPDSSTLTSILKAYAQMRLVDEAFRLFGSIDKLYGIEPSIEHYSCM 455
            KA++ F  M      PD ST TSIL A     LV E  R+F S++  +G+ P+IEHY C+
Sbjct: 873  KALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCL 932

Query: 454  IEVLGRAGKFKNAQEFIDASIPFDPVPLVWNTLLSASRIHGNMRVAKYAAEKLLDLEKNN 275
            + +LGRAG+F+ A+  I+  +PF P   VW TLL A RIHGN+ +A++AA   L L   N
Sbjct: 933  VGLLGRAGRFQEAETLIN-QMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARN 991

Query: 274  LTANVLLEQVLLTEGMWDDASKLKIKYKFSRG-----NCSWIEIRNNVHEFTS---DQIL 119
                VLL  V    G WDD +K++ +    RG       SWIE+ N +HEF +       
Sbjct: 992  PAVYVLLSNVYAAAGRWDDVAKIR-RVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPE 1050

Query: 118  TEDISSKLVEMEIFMEEMGYVADRNHLLHNAEEEGYE 8
            T +I  +L  + + ME  GY  D  ++LHN ++E  E
Sbjct: 1051 TAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQE 1087


>ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
            gi|162674797|gb|EDQ61301.1| predicted protein
            [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  149 bits (376), Expect = 4e-34
 Identities = 87/211 (41%), Positives = 122/211 (57%), Gaps = 9/211 (4%)
 Frame = -3

Query: 634  KAIELFKQMCWRK-KLPDSSTLTSILKAYAQMRLVDEAFRLFGSIDKLYGIEPSIEHYSC 458
            KAIELF QM     + PD ST TSIL A     LV E +++F S++  YG+ P+IEHY C
Sbjct: 616  KAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGC 675

Query: 457  MIEVLGRAGKFKNAQEFIDASIPFDPVPLVWNTLLSASRIHGNMRVAKYAAEKLLDLEKN 278
            ++ +LGRA +F+ A+  I+  +PF P   VW TLL A RIHGN+ +A++AA   L L   
Sbjct: 676  LVGLLGRARRFQEAETLIN-QMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR 734

Query: 277  NLTANVLLEQVLLTEGMWDDASKLKIKYKFSRG-----NCSWIEIRNNVHEFTS---DQI 122
            N    +LL  V    G WDD +K++ +    RG       SWIE+ N +HEF +      
Sbjct: 735  NPAVYILLSNVYAAAGRWDDVAKIR-RVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 793

Query: 121  LTEDISSKLVEMEIFMEEMGYVADRNHLLHN 29
             T +I ++L  + + MEE GY  D  H+LH+
Sbjct: 794  ETAEIYAELKRLSVEMEEAGYFPDTQHVLHD 824


>ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
            [Vitis vinifera]
          Length = 799

 Score =  145 bits (367), Expect = 5e-33
 Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 8/219 (3%)
 Frame = -3

Query: 634  KAIELFKQMCWRKKLPDSSTLTSILKAYAQMRLVDEAFRLFGSIDKLYGIEPSIEHYSCM 455
            +A+ELF+ M     LPD  T  ++L   +   LV+E  R F S+  LYGI P  +HY+ M
Sbjct: 511  QALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARM 570

Query: 454  IEVLGRAGKFKNAQEFIDASIPFDPVPLVWNTLLSASRIHGNMRVAKYAAEKLLDLEKNN 275
            I++L RAGKF  A++ I+ ++P +P P +W  LL+  RIHGNM +   AAE+L +L   +
Sbjct: 571  IDLLCRAGKFSEAKDMIE-TMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQH 629

Query: 274  LTANVLLEQVLLTEGMWDDASKLKIKYKFSRG-----NCSWIEIRNNVHEFTSDQILTED 110
                VLL  +  T G WDD +K++ K    +G      CSWIE+ N VH F  D I+  +
Sbjct: 630  DGTYVLLSNMYATVGRWDDVAKVR-KLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPE 688

Query: 109  IS---SKLVEMEIFMEEMGYVADRNHLLHNAEEEGYEGV 2
            +    + L E+ + M ++GY+ D   +LH+ E E  E V
Sbjct: 689  VQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYV 727