BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033289
         (807 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    89   1e-15
gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    73   8e-11
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    68   3e-09
ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula] g...    65   2e-08
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    64   3e-08

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 89.0 bits (219), Expect = 1e-15
 Identities = 61/198 (30%), Positives = 96/198 (48%), Gaps = 5/198 (2%)
 Frame = -1

Query: 801  RNKVQFDGKKPKLGNCKSFVRLQLRITGKLSKGHCYNTPPEFAILQYWNVGIQMRKAPRV 622
            RN  +F  +   + + K+ +   + ++G +S G C ++  + AIL+ ++V  + RK   +
Sbjct: 953  RNAFRFQSQLQSIQSAKARIHSLIAMSGNVSTGKCLHS--DSAILEEFSVSPRHRKYKDI 1010

Query: 621  KQCTWIPPEPDIVKLNTDXXXXXXXXXXXXXXAFRGNMGQFLLTLSMNIGLGDNYRAECM 442
                W  P P ++K+NTD               FR + G FL   S NIGL   + AE +
Sbjct: 1011 ILVLWKNPSPPLLKVNTDGSVVGGLAACGGL--FRDSSGSFLGAFSCNIGLASVFHAETL 1068

Query: 441  AITVGVETALKQGWKNMWIETDSEAAARAFATGD-VPWMLQPR*ITCTEGLQRWRI---- 277
            A  + +E A   GW+N+W+E+DS +A   F+    V W+L+ R        QR  I    
Sbjct: 1069 AFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNR----WHNAQRLGIQVIS 1124

Query: 276  TTIWREGNFTADLLAKQG 223
            + I  EGN  AD LA  G
Sbjct: 1125 SHILHEGNRCADNLANMG 1142


>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 72.8 bits (177), Expect = 8e-11
 Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
 Frame = -1

Query: 804 ERNKVQFDG-KKPKLGNCKSFVRLQLRITGKLSKGHCYNTPPEFAILQYWNVGIQMRKAP 628
           E N   FDG +KP      + +   LR++  L      ++  +F + + +++  +  +  
Sbjct: 179 ECNNKYFDGVQKPMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLFSIPFKTNRVN 238

Query: 627 RVKQCTWIPPEPDIVKLNTDXXXXXXXXXXXXXXAFRGNMGQFLLTLSMNIGLGDNYRAE 448
             ++  W+PP    +K+N D               FR +   F    + NIG      AE
Sbjct: 239 PCREIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAE 298

Query: 447 CMAITVGVETALKQGWKNMWIETDSEAAARA--FATGDVPWMLQPR*ITCTEGLQRWR-- 280
             A    +E A +    N+WIETDS    RA  F TG VPW +  R   C    +  R  
Sbjct: 299 YSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTG-VPWKMHIRWHNCLLFCRSIRSL 357

Query: 279 ITTIWREGNFTADLLAKQGVSL 214
            T + REGN  AD LAK G  L
Sbjct: 358 CTHVNREGNLVADALAKNGQGL 379


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
           gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
           protein ccsA [Medicago truncatula]
          Length = 666

 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 3/201 (1%)
 Frame = -1

Query: 804 ERNKVQFDGKKPKLGNCKSFVRLQLRITGKLSKGHCYNTPPEFAILQYWNVGIQMRKAPR 625
           ERN+  F  K   +    + +  +++++  L      +   ++ + + +N+  ++++   
Sbjct: 151 ERNQRCFHNKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYKVAKLFNIPFKVKRVTP 210

Query: 624 VKQCTWIPPEPDIVKLNTDXXXXXXXXXXXXXXAFRGNMGQFLLTLSMNIGLGDNYRAEC 445
                W PP  DIVK+N D                R +   FL  +S NIG      AE 
Sbjct: 211 HLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEF 270

Query: 444 MAITVGVETALKQGWKNMWIETDSEAAARAFATG-DVPWMLQPR*ITCTEGLQRWRITT- 271
            A  + +E A +    ++ +ETDS     AF  G  VPW ++ R   C +       +  
Sbjct: 271 CAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCV 330

Query: 270 -IWREGNFTADLLAKQGVSLT 211
            I REGN  AD LAK G  L+
Sbjct: 331 HILREGNMVADALAKHGQGLS 351


>ref|XP_003605652.1| GDSL esterase/lipase [Medicago truncatula]
           gi|355506707|gb|AES87849.1| GDSL esterase/lipase
           [Medicago truncatula]
          Length = 1004

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
 Frame = -1

Query: 522 FRGNMGQFLLTLSMNIGLGDNYRAECMAITVGVETALKQGWKNMWIETDSEAAARAF-AT 346
           FR     FL   + N+G G  Y+ E  AI   VE A ++ W+N+WIE+DS     AF   
Sbjct: 252 FRDQNANFLSCFAKNLGGGSAYQPELAAIMRVVEIAYQRNWRNIWIESDSALVVMAFKKM 311

Query: 345 GDVPWMLQPR*ITCTEGLQRWR--ITTIWREGNFTADLLAKQGVSL 214
             +P  L+ R I C + L R    IT I+RE N  AD LA +G+ +
Sbjct: 312 SMIPCRLRNRWINCRKLLCRMNFVITHIYREDNRCADKLASKGLDI 357


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
 Frame = -1

Query: 681 EFAILQYWNVGIQMRKAPRVKQCTWIPPEPDIVKLNTDXXXXXXXXXXXXXXAFRGNMGQ 502
           ++ + + +N+  ++++        W PP  DIVK+N D                R +   
Sbjct: 29  DYKVAKLFNIPFKVKRVTPHLDIIWKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHH 88

Query: 501 FLLTLSMNIGLGDNYRAECMAITVGVETALKQGWKNMWIETDSEAAARAFATG-DVPWML 325
           FL  +S NIG      AE  A  + +E A +    ++ +ETDS     AF  G  VPW +
Sbjct: 89  FLGAISSNIGNATPLEAEFCAGMMAMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQM 148

Query: 324 QPR*ITCTEGLQRWRITT--IWREGNFTADLLAKQGVSLT 211
           + R   C +       +   I REGN  AD LAK G  L+
Sbjct: 149 RARWQNCWDFCDSISCSCVHILREGNMVADALAKHGQGLS 188