BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033243
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...    91   1e-16
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub...    88   6e-16
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    87   1e-15
gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t...    87   1e-15
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    82   6e-14

>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
           Polynucleotidyl transferase, Ribonuclease H fold
           [Medicago truncatula]
          Length = 729

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
 Frame = -3

Query: 380 GSSFGKFYASRGIRQGDPLSHFLFILCSEFLSRKISSLLTXXXXXXXXXXXXXIPVTHLM 201
           G     FY SRGIRQGDPLS +LF++C E LS  I+  +               P++HL+
Sbjct: 51  GDKSESFYPSRGIRQGDPLSPYLFVICMERLSHIIADQVEADYWKPMRAGRYGPPISHLL 110

Query: 200 FADDCFIFMRANIAEAHHILNGINQYCAMSGQSINFNKYSLLFSHNL-HHKHKKII 36
           FADD  +F  A+I +AH +L+ ++ +C  SGQ IN  K  + FS N+ +H  + II
Sbjct: 111 FADDLLLFAEASIEQAHCVLHCLDMFCQSSGQKINREKTQVYFSKNVDNHLREDII 166


>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
            truncatula] gi|355513943|gb|AES95566.1| Replication
            protein A 70 kDa DNA-binding subunit [Medicago
            truncatula]
          Length = 1723

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 47/121 (38%), Positives = 65/121 (53%)
 Frame = -3

Query: 380  GSSFGKFYASRGIRQGDPLSHFLFILCSEFLSRKISSLLTXXXXXXXXXXXXXIPVTHLM 201
            G   G     RG+RQGDPLS +LFI+C+E LS  I                    ++HL+
Sbjct: 1045 GEKIGPIIPGRGLRQGDPLSPYLFIICAEGLSSLIRQAEGSGTISGAKICKNAPIISHLL 1104

Query: 200  FADDCFIFMRANIAEAHHILNGINQYCAMSGQSINFNKYSLLFSHNLHHKHKKIISRILK 21
            FADDCF+F +A   +A  + N +  Y + SGQSINF K  + +S N+    K  IS+IL 
Sbjct: 1105 FADDCFLFFKAKSGQAQGMKNILEMYESSSGQSINFQKSEVFYSRNVDDAVKASISQILG 1164

Query: 20   I 18
            +
Sbjct: 1165 V 1165


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 45/119 (37%), Positives = 67/119 (56%)
 Frame = -3

Query: 362  FYASRGIRQGDPLSHFLFILCSEFLSRKISSLLTXXXXXXXXXXXXXIPVTHLMFADDCF 183
            F  SRG+RQGDPLS FLF+  ++ LSR I+ +               +PV+HL FADD  
Sbjct: 1236 FLPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSL 1295

Query: 182  IFMRANIAEAHHILNGINQYCAMSGQSINFNKYSLLFSHNLHHKHKKIISRILKIPLTN 6
             F+RA +     + + ++ YC  SGQ IN  K S+ FS N   +   ++S I++IP+ +
Sbjct: 1296 FFLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVS 1354


>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
          Length = 405

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 47/117 (40%), Positives = 65/117 (55%)
 Frame = -3

Query: 368 GKFYASRGIRQGDPLSHFLFILCSEFLSRKISSLLTXXXXXXXXXXXXXIPVTHLMFADD 189
           G     RG+RQGDPLS +LFIL  E LS  I   +                V+HL+FAD+
Sbjct: 13  GPIVPGRGLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRGAPVVSHLLFADN 72

Query: 188 CFIFMRANIAEAHHILNGINQYCAMSGQSINFNKYSLLFSHNLHHKHKKIISRILKI 18
           CF+F RAN+ EA  +L  +  Y A SGQ IN +K  + FS N+    ++ +SRI+ +
Sbjct: 73  CFLFCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGV 129


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 48/121 (39%), Positives = 61/121 (50%)
 Frame = -3

Query: 380 GSSFGKFYASRGIRQGDPLSHFLFILCSEFLSRKISSLLTXXXXXXXXXXXXXIPVTHLM 201
           G   G     RG+RQGDPLS +LFILC+E L   I                    V+HL+
Sbjct: 405 GQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLL 464

Query: 200 FADDCFIFMRANIAEAHHILNGINQYCAMSGQSINFNKYSLLFSHNLHHKHKKIISRILK 21
           FADD   F +AN  +   IL  + QY ++SGQ INF+K S+ F H +    K  I  IL 
Sbjct: 465 FADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILG 524

Query: 20  I 18
           I
Sbjct: 525 I 525