BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033231
         (282 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI29194.3| unnamed protein product [Vitis vinifera]              116   2e-24
ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_003612489.1| Pentatricopeptide repeat-containing protein ...   100   1e-19
ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containi...    94   1e-17
gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indi...    90   2e-16

>emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/86 (62%), Positives = 65/86 (75%)
 Frame = +2

Query: 17  DLFVCNILVDMYAKCGELGSAECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKDMG 196
           D F+CN L+DMYAKCGEL S+ECVF GME+RD  SWNSMM GCAYN YP++S  YFK M 
Sbjct: 148 DSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA 207

Query: 197 LYYGCVRADNFSLSCTISACSSLGDL 274
             Y   +ADN SL+C +SA + LG+L
Sbjct: 208 --YSSEQADNVSLTCAVSASALLGEL 231


>ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  116 bits (290), Expect = 2e-24
 Identities = 54/86 (62%), Positives = 65/86 (75%)
 Frame = +2

Query: 17  DLFVCNILVDMYAKCGELGSAECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKDMG 196
           D F+CN L+DMYAKCGEL S+ECVF GME+RD  SWNSMM GCAYN YP++S  YFK M 
Sbjct: 107 DSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMA 166

Query: 197 LYYGCVRADNFSLSCTISACSSLGDL 274
             Y   +ADN SL+C +SA + LG+L
Sbjct: 167 --YSSEQADNVSLTCAVSASALLGEL 190


>ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513824|gb|AES95447.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 955

 Score =  100 bits (249), Expect = 1e-19
 Identities = 49/88 (55%), Positives = 65/88 (73%), Gaps = 2/88 (2%)
 Frame = +2

Query: 17  DLFVCNILVDMYAKCGELGSA--ECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKD 190
           D+ +CN L++MYAKCG++ S+  EC+FE ME++D  SWNS+M GC YNG  E+S  YF+ 
Sbjct: 232 DISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRR 291

Query: 191 MGLYYGCVRADNFSLSCTISACSSLGDL 274
           M   +   RAD+ SLSC ISACSSLG+L
Sbjct: 292 MN--FSEERADHVSLSCAISACSSLGEL 317


>ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Glycine max]
          Length = 944

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 46/86 (53%), Positives = 61/86 (70%)
 Frame = +2

Query: 17  DLFVCNILVDMYAKCGELGSAECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKDMG 196
           D+ + N LVDMYAKCG+L S+EC++E +E +D+ SWNS+M G  YN +PE++  YFK M 
Sbjct: 226 DISLGNALVDMYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMS 285

Query: 197 LYYGCVRADNFSLSCTISACSSLGDL 274
             +    ADN SL C ISA SSLG+L
Sbjct: 286 --FSEETADNVSLCCAISASSSLGEL 309


>gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
          Length = 916

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 46/86 (53%), Positives = 59/86 (68%)
 Frame = +2

Query: 17  DLFVCNILVDMYAKCGELGSAECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKDMG 196
           DL + N L+DMYAKCG+  S+E VF+ M +RD++SWNSM+SG  +NG  E S  YFK+M 
Sbjct: 198 DLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEM- 256

Query: 197 LYYGCVRADNFSLSCTISACSSLGDL 274
                 +AD  SLSC +SACS L DL
Sbjct: 257 -VRSSFQADEVSLSCVLSACSHLKDL 281



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 32/88 (36%), Positives = 48/88 (54%)
 Frame = +2

Query: 14  FDLFVCNILVDMYAKCGELGSAECVFEGMEFRDSSSWNSMMSGCAYNGYPERSWSYFKDM 193
           F+L V N L+ MY + G+  SAE +F  +  R+  SWN M+SG A N    R+  ++K M
Sbjct: 606 FNLRVKNALLTMYFRFGDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFYKKM 665

Query: 194 GLYYGCVRADNFSLSCTISACSSLGDLQ 277
             +      +  S+   I AC+ LGDL+
Sbjct: 666 EYF----EPNEISIVGIICACTQLGDLR 689