BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033193
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containi...   108   3e-22
ref|XP_002515531.1| pentatricopeptide repeat-containing protein,...   108   4e-22
ref|XP_003588753.1| Pentatricopeptide repeat-containing protein ...   108   6e-22
ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containi...    96   4e-18

>ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
           gi|449529652|ref|XP_004171812.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  114 bits (284), Expect = 1e-23
 Identities = 58/99 (58%), Positives = 70/99 (70%)
 Frame = -1

Query: 308 QIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDFXXXXXXXXXXXSHLYDTFLFNTIIRAY 129
           QIH H+LK GL NNPLVLTKF+S SS +++ D+           + LYD FLFNT+IRAY
Sbjct: 47  QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAY 106

Query: 128 AQTNGSKHNAVYCYCIMLRNAILPNKFTFPFLLNASAGL 12
           AQT  SK  A+  Y IML +AILPNKFT+PF+L A AGL
Sbjct: 107 AQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGL 145


>ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
           gi|296082021|emb|CBI21026.3| unnamed protein product
           [Vitis vinifera]
          Length = 583

 Score =  108 bits (271), Expect = 3e-22
 Identities = 54/102 (52%), Positives = 72/102 (70%)
 Frame = -1

Query: 308 QIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDFXXXXXXXXXXXSHLYDTFLFNTIIRAY 129
           Q+H H++K G QNNPLVLTKF+S SS+L++I +             +YD FLF+TIIRAY
Sbjct: 25  QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDA-RVYDAFLFSTIIRAY 83

Query: 128 AQTNGSKHNAVYCYCIMLRNAILPNKFTFPFLLNASAGLLDL 3
           A+++ SKHNA++ Y +ML   I PNK+ FPF+L A AGL DL
Sbjct: 84  AESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL 125


>ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545475|gb|EEF46980.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 397

 Score =  108 bits (270), Expect = 4e-22
 Identities = 56/100 (56%), Positives = 70/100 (70%), Gaps = 1/100 (1%)
 Frame = -1

Query: 308 QIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDFXXXXXXXXXXXSHLYDTFLFNTIIRAY 129
           QIH  +LK GL NNPLVLTK++STSS+L++ID+             LYDTFLFNTIIRAY
Sbjct: 50  QIHTQILKLGLSNNPLVLTKYTSTSSNLHAIDYASSFIFSPESDKRLYDTFLFNTIIRAY 109

Query: 128 AQTNG-SKHNAVYCYCIMLRNAILPNKFTFPFLLNASAGL 12
           A +N  SK  A+  Y +ML   +LPNKFT+PF+L A AG+
Sbjct: 110 AHSNNVSKGKALCMYKLMLEYDVLPNKFTYPFVLKACAGI 149


>ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355477801|gb|AES59004.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  108 bits (269), Expect = 6e-22
 Identities = 57/103 (55%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
 Frame = -1

Query: 308 QIHAHLLKSGLQNNPLVLTKFSSTSSDLNSI----DFXXXXXXXXXXXSHLYDTFLFNTI 141
           QIHA +LK+GLQNNPL+LTKF+STSS+LNSI     F           +  YD FLFNT+
Sbjct: 36  QIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTL 95

Query: 140 IRAYAQTNGSKHNAVYCYCIMLRNAILPNKFTFPFLLNASAGL 12
           IRAY+QT  SK N+   Y  MLR  + PNKFTFPF+L   AG+
Sbjct: 96  IRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGI 138


>ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
 Frame = -1

Query: 308 QIHAHLLKSGLQNNPLVLTKFSSTSSDLNSIDFXXXXXXXXXXXSH--LYDTFLFNTIIR 135
           QIH+ +LK GL +NPLVLTKF++TSS  N++ +           +    +D FLFNT+IR
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 134 AYAQTNGSKHNAVYCYCIMLRNAILPNKFTFPFLLNASAGLLDL 3
           A+AQT  SK +A+  Y  M R+A+ PNKFTFPF+L A AG++ L
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRL 243