BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033188
         (579 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   211   5e-53
emb|CBI19765.3| unnamed protein product [Vitis vinifera]              211   5e-53
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   209   4e-52
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   198   6e-49
ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arab...   196   3e-48

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
            [Vitis vinifera]
          Length = 1545

 Score =  211 bits (538), Expect = 5e-53
 Identities = 107/199 (53%), Positives = 132/199 (66%), Gaps = 7/199 (3%)
 Frame = -3

Query: 577  SSNLKEXTIVGFFGKRGWYIDSVGVHVIEGKVSTPQ--PSRSFVPHNMDDIRI----TEV 416
            SSN+KE  IVGF G+ G +ID++GVH+IEGK   P   PS   +  N   I++     EV
Sbjct: 1295 SSNIKEGVIVGFHGRTGLFIDAIGVHMIEGKARPPTRPPSNKQLNQNQSQIQVLDNAAEV 1354

Query: 415  DNPQWSNKLVLAKRGGQNEEVTYGVVKEPAPCXXXXXXXXXXXXXXXGVFTGVKQIFLTR 236
            D P W +   +  +GG  EEV  GVVKEPAPC               GVF+G+KQI+LTR
Sbjct: 1355 DRPLWYSNKSVPTKGGPFEEVGSGVVKEPAPCGPGPWGGDGGRPWDDGVFSGIKQIYLTR 1414

Query: 235  TEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCGYYGSISRDDRMK 59
             E ICSIQIEY RNG S+WS +HGG  G  T ++K +YPHEVV+C+CGYYG IS ++   
Sbjct: 1415 AEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPISINEPWN 1474

Query: 58   AIKSLTFYTSRGKYGPYGE 2
            AIKSLTFYTSRGKYGP+GE
Sbjct: 1475 AIKSLTFYTSRGKYGPFGE 1493



 Score = 82.0 bits (201), Expect = 6e-14
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
 Frame = -3

Query: 271  VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGSGE-ATTKIKFDYPHEVVTCVCG 95
            V TGV+QI L+R   I SI++ YD+NG +VW  ++GG+G     KI  DYP+EV+T + G
Sbjct: 1199 VSTGVRQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITG 1258

Query: 94   YYGSISRDDRMKAIKSLTFYTSRGKYGPYGE 2
            YY   +       IKSLTF+T++ KYGP+GE
Sbjct: 1259 YYAP-TMVMGPNIIKSLTFHTTKTKYGPFGE 1288



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 271  VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCG 95
            V++ V+Q+ +     I SI IEYD+NG SVWS +HGGS G  T ++K D P E +T + G
Sbjct: 968  VYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHG 1027

Query: 94   YYGSISRDDRMKAIKSLTFYTSRGKYGPYG 5
            +YGS+     +  ++SLT  +++  YGP+G
Sbjct: 1028 HYGSLLERGPV-FVRSLTLESNKRTYGPFG 1056


>emb|CBI19765.3| unnamed protein product [Vitis vinifera]
          Length = 670

 Score =  211 bits (538), Expect = 5e-53
 Identities = 107/199 (53%), Positives = 132/199 (66%), Gaps = 7/199 (3%)
 Frame = -3

Query: 577  SSNLKEXTIVGFFGKRGWYIDSVGVHVIEGKVSTPQ--PSRSFVPHNMDDIRI----TEV 416
            SSN+KE  IVGF G+ G +ID++GVH+IEGK   P   PS   +  N   I++     EV
Sbjct: 420  SSNIKEGVIVGFHGRTGLFIDAIGVHMIEGKARPPTRPPSNKQLNQNQSQIQVLDNAAEV 479

Query: 415  DNPQWSNKLVLAKRGGQNEEVTYGVVKEPAPCXXXXXXXXXXXXXXXGVFTGVKQIFLTR 236
            D P W +   +  +GG  EEV  GVVKEPAPC               GVF+G+KQI+LTR
Sbjct: 480  DRPLWYSNKSVPTKGGPFEEVGSGVVKEPAPCGPGPWGGDGGRPWDDGVFSGIKQIYLTR 539

Query: 235  TEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCGYYGSISRDDRMK 59
             E ICSIQIEY RNG S+WS +HGG  G  T ++K +YPHEVV+C+CGYYG IS ++   
Sbjct: 540  AEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPISINEPWN 599

Query: 58   AIKSLTFYTSRGKYGPYGE 2
            AIKSLTFYTSRGKYGP+GE
Sbjct: 600  AIKSLTFYTSRGKYGPFGE 618



 Score = 82.0 bits (201), Expect = 6e-14
 Identities = 44/91 (48%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
 Frame = -3

Query: 271 VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGSGE-ATTKIKFDYPHEVVTCVCG 95
           V TGV+QI L+R   I SI++ YD+NG +VW  ++GG+G     KI  DYP+EV+T + G
Sbjct: 324 VSTGVRQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITG 383

Query: 94  YYGSISRDDRMKAIKSLTFYTSRGKYGPYGE 2
           YY   +       IKSLTF+T++ KYGP+GE
Sbjct: 384 YYAP-TMVMGPNIIKSLTFHTTKTKYGPFGE 413



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 271 VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCG 95
           V++ V+Q+ +     I SI IEYD+NG SVWS +HGGS G  T ++K D P E +T + G
Sbjct: 58  VYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHG 117

Query: 94  YYGSISRDDRMKAIKSLTFYTSRGKYGPYG 5
           +YGS+     +  ++SLT  +++  YGP+G
Sbjct: 118 HYGSLLERGPV-FVRSLTLESNKRTYGPFG 146


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  209 bits (531), Expect = 4e-52
 Identities = 106/187 (56%), Positives = 135/187 (72%), Gaps = 3/187 (1%)
 Frame = -3

Query: 553  IVGFFGKRGWYIDSVGVHVIEGKVSTPQPSRSFVPHNM--DDIRITEVDNPQWSNKLVLA 380
            IVGF GK G ++D++GV+++EGKV   +P+R ++   +   +  +TE+DN  WSNKLVLA
Sbjct: 984  IVGFHGKEGLFLDAIGVNLMEGKV---KPARHYLTDAIIQAEADVTEIDNSPWSNKLVLA 1040

Query: 379  KRGGQNEEVTYGVVKEPAPCXXXXXXXXXXXXXXXGVFTGVKQIFLTRTEVICSIQIEYD 200
            +RG   +EV   VVKEPAPC               GVF+G+KQIF+TR E ICSIQIEYD
Sbjct: 1041 RRG-PTDEVACSVVKEPAPCGPGPWGGDGGRPWDDGVFSGIKQIFVTRAEAICSIQIEYD 1099

Query: 199  RNGHSVWSVRHGGSG-EATTKIKFDYPHEVVTCVCGYYGSISRDDRMKAIKSLTFYTSRG 23
            RNG SVWSVRHGGSG  AT ++K +YPHEV+T + GYYG  SRD+R   +KSLTFYTSRG
Sbjct: 1100 RNGQSVWSVRHGGSGGTATNRVKLEYPHEVLTRISGYYGPASRDERPTVVKSLTFYTSRG 1159

Query: 22   KYGPYGE 2
            +YGP+GE
Sbjct: 1160 QYGPFGE 1166



 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 45/89 (50%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
 Frame = -3

Query: 265  TGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGSGE-ATTKIKFDYPHEVVTCVCGYY 89
            TG++QI+L+R+  I SI+++YDRNG +VW  +HGG+G   T KI FDYP+E++T + G Y
Sbjct: 882  TGIRQIYLSRSIGIVSIRVQYDRNGQAVWGSKHGGTGGFKTEKITFDYPYEILTHISGTY 941

Query: 88   GSISRDDRMKAIKSLTFYTSRGKYGPYGE 2
            G +        IKSLTFYT++GK+GP+G+
Sbjct: 942  GPLMFMG-PNIIKSLTFYTNKGKHGPFGD 969



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 39/90 (43%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
 Frame = -3

Query: 271 VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCG 95
           V++ V+Q+ +     I SIQIEYD+ G S+WS +HGG+ G  T K+K DYP E +  V G
Sbjct: 650 VYSTVRQLVIVHGSGIDSIQIEYDKKGTSIWSEKHGGNGGNRTDKVKLDYPDEYLASVSG 709

Query: 94  YYGSISRDDRMKAIKSLTFYTSRGKYGPYG 5
           +YGS+++   +  ++SLTF +++  YGP+G
Sbjct: 710 HYGSLNQWGPV-FVRSLTFQSNKRTYGPFG 738


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like
            [Cucumis sativus]
          Length = 1463

 Score =  198 bits (503), Expect = 6e-49
 Identities = 103/196 (52%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
 Frame = -3

Query: 577  SSNLKEXTIVGFFGKRGWYIDSVGVHVIEGKVS--TPQPSRSFVPHNMDDIRITEVDNPQ 404
            S+N+KE  IVGF G++G ++D++GVH++EGKV+  +  PSR  +P       + E  N  
Sbjct: 1222 STNVKEGKIVGFHGRKGLFLDALGVHIVEGKVTPLSRPPSRDIIPAAPP---LLENSNAP 1278

Query: 403  WSNKLVLAKRGGQNEEVTYGVVKEPAPCXXXXXXXXXXXXXXXGVFTGVKQIFLTRT-EV 227
            W+ KL  +K  G  EE+  GVVKEPAPC               GVF+G+KQI+LTR+ E 
Sbjct: 1279 WTMKLAPSK--GALEEMARGVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEA 1336

Query: 226  ICSIQIEYDRNGHSVWSVRHGG-SGEATTKIKFDYPHEVVTCVCGYYGSISRDDRMKAIK 50
             CSIQIEYDRN  SVWSVRHGG SG    ++K DYPHEV+TC+ GYYG I +D+R +A+K
Sbjct: 1337 FCSIQIEYDRNKQSVWSVRHGGNSGTTIHRVKLDYPHEVLTCISGYYGYIGKDERQQAVK 1396

Query: 49   SLTFYTSRGKYGPYGE 2
            SLTF+TSRGK+GP+GE
Sbjct: 1397 SLTFHTSRGKFGPFGE 1412



 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 33/220 (15%)
 Frame = -3

Query: 562  EXTIVGFFGKRGWYIDSVGVHVIEGKVSTPQPS--------------------RSFVPHN 443
            E  IVGF G+ G Y+D++GV++    + +P  +                    +  V  N
Sbjct: 999  EGKIVGFHGRSGLYLDAIGVYLKPMAIQSPSKAMIQSRDHLASKTENEGYSIIQGSVGQN 1058

Query: 442  MDDI-RITEVDN-----PQWSNKLVLAKRGGQNEEVTYGVVKEPA------PCXXXXXXX 299
             D +  + + D      P   +K V +    ++ +    + K P+      PC       
Sbjct: 1059 YDIVLAVRQKDEFKTPLPTTISKQVSSSSSSESSDDESTIKKGPSKVENVVPCGPWGGSG 1118

Query: 298  XXXXXXXXGVFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGSGEAT-TKIKFDYP 122
                      ++G++QI ++R   I  I++ Y  +  S+W  R GG+G     K+ FDYP
Sbjct: 1119 GTVFDDGC--YSGIRQINVSRNVGIVYIRVLYACDEESIWGARAGGTGGFKYDKVIFDYP 1176

Query: 121  HEVVTCVCGYYGSISRDDRMKAIKSLTFYTSRGKYGPYGE 2
            +E++T V G+YG +        IKSLTF+T++ KYGP+GE
Sbjct: 1177 YEILTHVTGHYGPVMYMGP-NVIKSLTFHTTKAKYGPFGE 1215



 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 38/90 (42%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = -3

Query: 271  VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGGS-GEATTKIKFDYPHEVVTCVCG 95
            V++ ++Q+ +     I SI+I+YD  G S+WS RHGG+ G  T  +K D+P E +T + G
Sbjct: 898  VYSTIRQLIICHGAGIDSIKIQYDVKGSSIWSDRHGGNGGTKTDTVKLDFPDEYLTMIRG 957

Query: 94   YYGSISRDDRMKAIKSLTFYTSRGKYGPYG 5
            +YGS    D++  ++SLTF +++ KYGPYG
Sbjct: 958  HYGSFVSFDKV-FVRSLTFMSNKKKYGPYG 986


>ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
            lyrata] gi|297338906|gb|EFH69323.1| hypothetical protein
            ARALYDRAFT_472198 [Arabidopsis lyrata subsp. lyrata]
          Length = 1490

 Score =  196 bits (497), Expect = 3e-48
 Identities = 100/195 (51%), Positives = 130/195 (66%), Gaps = 6/195 (3%)
 Frame = -3

Query: 568  LKEXTIVGFFGKRGWYIDSVGVHVIEGKVST---PQPSRSFVPHNMDDIRITEVDNPQWS 398
            + E  +VGF G+ G ++DS+GVHV+E K+S+     P+ S VPHN       +++N  W+
Sbjct: 1245 IDEGKVVGFLGREGLFLDSIGVHVMECKISSLKPASPNNSIVPHNNSGT--AQIENSPWA 1302

Query: 397  NKLVLAKRGGQNEEVTYGVVKEPAPCXXXXXXXXXXXXXXXGVFTGVKQIFLTR-TEVIC 221
            NKLVLA  G   EEV  GVVKEP P                GVF+G+KQIF+TR  +VI 
Sbjct: 1303 NKLVLAANG-HGEEVDRGVVKEPTPSGSGPWGGDGGQAWDDGVFSGIKQIFVTRGNDVIS 1361

Query: 220  SIQIEYDRNGHSVWSVRHGG--SGEATTKIKFDYPHEVVTCVCGYYGSISRDDRMKAIKS 47
            SIQ+EYDRNG SVWS +HGG  +G AT +IK +YP+E +TC+ GYYG ++  DR   +KS
Sbjct: 1362 SIQVEYDRNGQSVWSTKHGGDNNGVATHRIKLEYPNETITCISGYYGPLNNSDRYNVVKS 1421

Query: 46   LTFYTSRGKYGPYGE 2
            L+FYTSRGKYGPYGE
Sbjct: 1422 LSFYTSRGKYGPYGE 1436



 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 74/221 (33%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
 Frame = -3

Query: 553  IVGFFGKRGWYIDSVGVHV--------------IEGKVSTPQPSRSF--------VPHNM 440
            IVGF GK GWY+D++GVH+              +    S PQ  +          V  N 
Sbjct: 1023 IVGFHGKAGWYLDAIGVHIQPVPKENNPSSKILLHSHQSFPQGDKKHEYSVIQGSVGQNF 1082

Query: 439  DDIRITEVDNPQW--------------SNKLVLAKRGGQNEEVTYGVVKEPAPCXXXXXX 302
            D +      +P                 +KLV      Q++    G  K   P       
Sbjct: 1083 DIVVALRKKDPTLPSFESRDSAGAEITKHKLVTDTEKSQSK--VEGGAKTYGP-----WG 1135

Query: 301  XXXXXXXXXGVFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGG-SGEATTKIKFDY 125
                     G++TG++QI L+R+  I SI++ YD  G +VW  +HGG  G    KI FDY
Sbjct: 1136 GTGGIMFDDGIYTGIRQINLSRSVGIVSIKVCYDFRGQAVWGSKHGGMGGFKHDKIVFDY 1195

Query: 124  PHEVVTCVCGYYGSISRDDRMKAIKSLTFYTSRGKYGPYGE 2
            P EV+T V G YG +        IKSLTF T+RGK+GPYGE
Sbjct: 1196 PSEVLTHVTGTYGPLMYMG-PNVIKSLTFRTNRGKHGPYGE 1235



 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 271  VFTGVKQIFLTRTEVICSIQIEYDRNGHSVWSVRHGG-SGEATTKIKFDYPHEVVTCVCG 95
            ++T VKQI +     I SIQ+EYD+NG SVWS + GG  G+   K+K DYPHE +  + G
Sbjct: 919  MYTTVKQIIIAHGSGIDSIQVEYDKNGSSVWSEKRGGKGGKKFDKVKLDYPHEYLISING 978

Query: 94   YYGSISRDDRMKAIKSLTFYTSRGKYGPYG 5
             YGS      +  ++SLTF ++R KYGP+G
Sbjct: 979  TYGSFDVWGTL-CVRSLTFESNRRKYGPFG 1007