BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00033156
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28363.3| unnamed protein product [Vitis vinifera]              156   2e-36
ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containi...   156   2e-36
ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [S...   127   9e-28
ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]        120   9e-26

>emb|CBI28363.3| unnamed protein product [Vitis vinifera]
          Length = 930

 Score =  156 bits (394), Expect = 2e-36
 Identities = 77/145 (53%), Positives = 99/145 (68%)
 Frame = +1

Query: 1   GLRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMN 180
           GLR+F +MV  GI PD    SMV+GA   L  +  G Q HC + KMG  S L+LEN+LM+
Sbjct: 206 GLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMD 265

Query: 181 FYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFT 360
           FY KC DL    ++F  M +++LVSWNT I GYVHN  Y EALR+FQ +M E  +CDDF+
Sbjct: 266 FYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFS 325

Query: 361 LTSVLYAVTCLEALNLGREIHGYII 435
           L S+L AV+ L  L+ G+EIHGYI+
Sbjct: 326 LLSILKAVSGLGHLDHGKEIHGYIL 350



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 47/133 (35%), Positives = 69/133 (51%)
 Frame = +1

Query: 37  IRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSV 216
           +RPD  V ++V+ A   +     G  +H  V K       F+EN L++ Y  C  L  + 
Sbjct: 117 LRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAA 176

Query: 217 QIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLE 396
            +F  + K DLV W++I+ GYV N    E LR+F  M+S  ++ D F  + VL A T LE
Sbjct: 177 VVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLE 236

Query: 397 ALNLGREIHGYII 435
             + G + H YII
Sbjct: 237 CWDFGTQAHCYII 249



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 40/184 (21%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNF 183
           LR+F  ++    + D      ++ A + LG    G ++H  + + G+ ++ ++ ++L++ 
Sbjct: 308 LRIFQILMEEVSQCDDFSLLSILKAVSGLGHLDHGKEIHGYILRAGIETNRYVVSSLLDM 367

Query: 184 YVKCRD----------------------------------------LNSSVQIFDLMPKR 243
           Y+ C D                                        L ++ ++F  + + 
Sbjct: 368 YIGCIDHESLYPRVEVPLKLLNYLEGGGYDEFIMTSLLKWCSLESSLETAKRVFTRVEQP 427

Query: 244 DLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLEALNLGREIH 423
           D   W+ +I G+  N  + EAL++F+ M  + +K ++FT TSV+ A   LE L  G+E+H
Sbjct: 428 DTAPWSALISGHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELH 487

Query: 424 GYII 435
             I+
Sbjct: 488 CKIL 491



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/92 (33%), Positives = 47/92 (51%)
 Frame = +1

Query: 106 GIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVH 285
           G Q H  + K G+ S   + N+L+  Y  C   + +VQ F+LMP++D  SW +I+   V 
Sbjct: 583 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 642

Query: 286 NHFYHEALRVFQAMMSEDLKCDDFTLTSVLYA 381
           +    EAL +   M  ++   D  T  SVL A
Sbjct: 643 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 674



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
 Frame = +1

Query: 145 RSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQA 324
           R+ LF  N  +  YV    +  + ++FD MP+R LVSW  ++ GY  +    E L +F  
Sbjct: 50  RTRLF--NLYLRMYVNAGAMQEARKLFDEMPERSLVSWTIVMSGYARHGPASEVLMMFWD 107

Query: 325 MMSED----LKCDDFTLTSVLYAVTCLEALNLGREIHGYII 435
           M+       L+ D F    VL A   +E L+ GR +HG ++
Sbjct: 108 MLCGSGGGLLRPDSFVFAVVLRACGMVECLSYGRGVHGLVV 148


>ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 906

 Score =  156 bits (394), Expect = 2e-36
 Identities = 77/145 (53%), Positives = 99/145 (68%)
 Frame = +1

Query: 1   GLRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMN 180
           GLR+F +MV  GI PD    SMV+GA   L  +  G Q HC + KMG  S L+LEN+LM+
Sbjct: 147 GLRIFCDMVSGGIEPDAFAFSMVLGACTNLECWDFGTQAHCYIIKMGFDSCLYLENSLMD 206

Query: 181 FYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFT 360
           FY KC DL    ++F  M +++LVSWNT I GYVHN  Y EALR+FQ +M E  +CDDF+
Sbjct: 207 FYAKCGDLEGMRRVFSHMSEKNLVSWNTFINGYVHNFHYLEALRIFQILMEEVSQCDDFS 266

Query: 361 LTSVLYAVTCLEALNLGREIHGYII 435
           L S+L AV+ L  L+ G+EIHGYI+
Sbjct: 267 LLSILKAVSGLGHLDHGKEIHGYIL 291



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 47/133 (35%), Positives = 69/133 (51%)
 Frame = +1

Query: 37  IRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSV 216
           +RPD  V ++V+ A   +     G  +H  V K       F+EN L++ Y  C  L  + 
Sbjct: 58  LRPDSFVFAVVLRACGMVECLSYGRGVHGLVVKQSSVVDSFVENALVSMYGSCGALEDAA 117

Query: 217 QIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLE 396
            +F  + K DLV W++I+ GYV N    E LR+F  M+S  ++ D F  + VL A T LE
Sbjct: 118 VVFGGIDKPDLVGWSSILSGYVKNGLEEEGLRIFCDMVSGGIEPDAFAFSMVLGACTNLE 177

Query: 397 ALNLGREIHGYII 435
             + G + H YII
Sbjct: 178 CWDFGTQAHCYII 190



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 34/114 (29%), Positives = 65/114 (57%)
 Frame = +1

Query: 94  SFGGGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIII 273
           S   G   H  + K+ ++S  ++ ++L++ Y KC    ++ ++F  + + D   W+ +I 
Sbjct: 354 SLESGKMFHSLIIKLDLKSDSYVLSSLIDMYSKCGIWEAAKRVFTRVEQPDTAPWSALIS 413

Query: 274 GYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLEALNLGREIHGYII 435
           G+  N  + EAL++F+ M  + +K ++FT TSV+ A   LE L  G+E+H  I+
Sbjct: 414 GHSWNGCFAEALKLFRKMQFDGIKANEFTFTSVILACLALENLRKGKELHCKIL 467



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/92 (33%), Positives = 47/92 (51%)
 Frame = +1

Query: 106 GIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVH 285
           G Q H  + K G+ S   + N+L+  Y  C   + +VQ F+LMP++D  SW +I+   V 
Sbjct: 559 GTQAHAYMTKRGLISHPTISNSLIQMYSACGKFDEAVQAFNLMPEKDTCSWTSILSARVE 618

Query: 286 NHFYHEALRVFQAMMSEDLKCDDFTLTSVLYA 381
           +    EAL +   M  ++   D  T  SVL A
Sbjct: 619 HGHPSEALNLISQMRWKNKPADQSTFRSVLNA 650


>ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
           gi|241933759|gb|EES06904.1| hypothetical protein
           SORBIDRAFT_04g021580 [Sorghum bicolor]
          Length = 798

 Score =  127 bits (319), Expect = 9e-28
 Identities = 67/144 (46%), Positives = 88/144 (61%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNF 183
           L LF+EM R GI  D    S+ + A++ LG  G G Q+HCC+ KMG+    FL+N L+ F
Sbjct: 203 LMLFMEMARDGIACDAFTLSVALRAASSLGHVGLGHQLHCCMIKMGLVGKEFLDNCLIGF 262

Query: 184 YVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTL 363
           Y +  +L     +FD M  +DLVSWNTII  Y  N  + EA   F+AMM E  +CD+FTL
Sbjct: 263 YGRSGELQLMRNVFDEMNGKDLVSWNTIIQCYAENLCHEEASAHFRAMMFEFAECDEFTL 322

Query: 364 TSVLYAVTCLEALNLGREIHGYII 435
            S+L+ VT   A   G EIHGY+I
Sbjct: 323 GSILHVVTATGAFGHGMEIHGYLI 346



 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 51/141 (36%), Positives = 79/141 (56%), Gaps = 1/141 (0%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMG-MRSSLFLENTLMN 180
           L L + M+   +RPD  V S+ + A A +GS G G Q+H  VAK+G + + LF+ N L+ 
Sbjct: 101 LELLLCMLGLLVRPDAFVFSVALRACAAVGSLGLGRQLHGAVAKLGYVGADLFVANGLVT 160

Query: 181 FYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFT 360
            Y  C+ L  + ++F  +   DLVSW +++  Y  N    EAL +F  M  + + CD FT
Sbjct: 161 MYSSCQSLRCAEKVFGSITSPDLVSWTSMLSAYTENGCDAEALMLFMEMARDGIACDAFT 220

Query: 361 LTSVLYAVTCLEALNLGREIH 423
           L+  L A + L  + LG ++H
Sbjct: 221 LSVALRAASSLGHVGLGHQLH 241



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNF 183
           + LF  + R G   D   + +++ +  KLG    G+Q H  + K G+ S+    + L++ 
Sbjct: 580 VNLFHVIQRCGANLDYHTARLILSSCGKLGLLEEGLQAHAYMTKRGLASTACTNSYLIDM 639

Query: 184 YVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTL 363
           Y  C  L  +   F+ MP +D  SW +I+   V N     A+R+F  M  E  +      
Sbjct: 640 YSSCGSLRHAFDAFNYMPDKDASSWTSIVAANVENGCPETAIRLFSQMQKEKCRPTPEAF 699

Query: 364 TSVLYA 381
            SVL A
Sbjct: 700 LSVLKA 705



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
 Frame = +1

Query: 55  VSSMVIGASAKLGSFG----GGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQI 222
           +   ++ +S K  + G     G  +H C+ K  M    F+ ++L++ Y KC  L  S  +
Sbjct: 392 LDQFIVASSLKSCASGLDLVAGRMLHACILKSNMNPDSFVTSSLVDMYAKCGALEESNML 451

Query: 223 FDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLEAL 402
           F          W+  I G   N  Y  A+ +F+ M SE ++ ++FT T++L A   L   
Sbjct: 452 FSRTKNPGTAVWSAAISGNCLNGQYGRAVHLFRRMQSEHVQPNEFTYTAILTACMALGDT 511

Query: 403 NLGREIH 423
           + G EIH
Sbjct: 512 DSGMEIH 518


>ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 789

 Score =  125 bits (313), Expect = 5e-27
 Identities = 66/142 (46%), Positives = 91/142 (64%)
 Frame = +1

Query: 10  LFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNFYV 189
           LFVEMV +GIR D    S+ + A++ L +   G Q+HCC+ K+G  +S FLEN L+ FY 
Sbjct: 195 LFVEMVHAGIRCDAFTLSVALRAASSLANLSLGHQLHCCIIKLGFSNSGFLENCLIEFYG 254

Query: 190 KCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTS 369
           K  +L+   ++FD M  +DLVS NT+I  Y  N    +AL  F+AMM E  +CD+FTL S
Sbjct: 255 KSSELHLMQKVFDDMDDKDLVSSNTVIQCYADNMCDEQALSHFRAMMFEGSECDEFTLGS 314

Query: 370 VLYAVTCLEALNLGREIHGYII 435
           +L+ VT   A + G EIHGY+I
Sbjct: 315 ILHVVTRRGAFDYGMEIHGYLI 336



 Score =  101 bits (252), Expect = 5e-20
 Identities = 55/145 (37%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMG-MRSSLFLENTLMN 180
           L L + M+   +RPD  V S+ + A A +GS   G Q+HC  AKMG + + LF+ N L+ 
Sbjct: 91  LVLLLRMMAWSLRPDGFVFSVALRACAAIGSQRFGRQLHCAAAKMGYVGADLFVANGLLT 150

Query: 181 FYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFT 360
            Y  CR L  + ++F+ +   DLVSW +++ GY  N  + EA+ +F  M+   ++CD FT
Sbjct: 151 MYASCRSLGCAEKVFNGIATPDLVSWTSMLSGYTENGCHAEAVMLFVEMVHAGIRCDAFT 210

Query: 361 LTSVLYAVTCLEALNLGREIHGYII 435
           L+  L A + L  L+LG ++H  II
Sbjct: 211 LSVALRAASSLANLSLGHQLHCCII 235



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 34/107 (31%), Positives = 54/107 (50%)
 Frame = +1

Query: 106 GIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVH 285
           G  +H  + K+ M S  F+ ++L++ Y KC  L  S  +F          W+ +I G   
Sbjct: 403 GRMLHAYILKLNMNSDAFVTSSLVDMYAKCGCLEESHLLFSTTKYPGTAEWSAVISGNCL 462

Query: 286 NHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLEALNLGREIHG 426
           N  +  AL +F+ M  + ++ ++FT TSVL A   L  +  G EIHG
Sbjct: 463 NGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIEIHG 509


>gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]
          Length = 798

 Score =  120 bits (302), Expect = 9e-26
 Identities = 65/146 (44%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGI--QMHCCVAKMGMRSSLFLENTLM 177
           L LF+EM R G+  D    S+ + A++ LG  G G+  Q+HCC+ KMG+    FL+N L+
Sbjct: 202 LVLFMEMARGGVACDAFTLSVALRAASSLGHVGVGLGHQLHCCMIKMGLVGKEFLDNCLI 261

Query: 178 NFYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDF 357
            FY +  +L     +FD M  +DLVSWNT+I  Y  N  + EA   F+AMM E  +CD+F
Sbjct: 262 GFYGRSGELQLMRNVFDEMNGKDLVSWNTVIQCYAENLCHEEASAHFRAMMFEFAECDEF 321

Query: 358 TLTSVLYAVTCLEALNLGREIHGYII 435
           TL S+L  VT   A   G EIHGY+I
Sbjct: 322 TLGSILQVVTRTGAFGHGMEIHGYLI 347



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
 Frame = +1

Query: 4   LRLFVEMVRSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMG-MRSSLFLENTLMN 180
           L L + M+   +RPD  V S+ + A A +GS   G Q+H  VAK+G +   LF+ N L+ 
Sbjct: 100 LELLLCMLGLLVRPDAFVFSVALRACAAVGSLRLGRQLHGAVAKLGYVGVDLFVANGLVT 159

Query: 181 FYVKCRDLNSSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFT 360
            Y  C+ L  + ++F  +   DLVSW +++  Y  N    EAL +F  M    + CD FT
Sbjct: 160 MYSSCQSLPCAEKVFGSIASPDLVSWTSMLSAYTENGRDAEALVLFMEMARGGVACDAFT 219

Query: 361 LTSVLYAVTCL--EALNLGREIH 423
           L+  L A + L    + LG ++H
Sbjct: 220 LSVALRAASSLGHVGVGLGHQLH 242



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
 Frame = +1

Query: 55  VSSMVIGASAKLGSFG----GGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLNSSVQI 222
           +   ++ +S K  + G     G  +H C+ K  M    F+ ++L++ Y KC  L  S  +
Sbjct: 393 LDQFIVASSLKSCASGLDLLAGRMLHACILKSDMNPDSFVTSSLLDMYAKCGALEESNLL 452

Query: 223 FDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAMMSEDLKCDDFTLTSVLYAVTCLEAL 402
           F          W+  I G   N  Y  A+++F+ M SE ++ ++FT T++L A   L   
Sbjct: 453 FSRTKNPGTAEWSAAISGNCLNGQYGRAVQLFRRMQSEHVQPNEFTYTAILTACMALGDT 512

Query: 403 NLGREIH 423
             G EIH
Sbjct: 513 ASGVEIH 519



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/100 (29%), Positives = 47/100 (47%)
 Frame = +1

Query: 28  RSGIRPDVTVSSMVIGASAKLGSFGGGIQMHCCVAKMGMRSSLFLENTLMNFYVKCRDLN 207
           R G   D   + +++ +  KLG    G+Q H  + K G+ SS    + L++ Y     L 
Sbjct: 589 RCGANLDCHTARLILSSCGKLGLLEEGLQAHAYMTKRGLASSACTNSYLIDMYSSVGSLR 648

Query: 208 SSVQIFDLMPKRDLVSWNTIIIGYVHNHFYHEALRVFQAM 327
            +   F+ MP +D  SW +I+   V N     A+R+F  M
Sbjct: 649 HASDAFNYMPAKDASSWASIVAANVENGCPETAIRLFSQM 688