BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032497
         (597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   176   2e-42
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   170   2e-40
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   164   8e-39
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   137   2e-30
emb|CAN76892.1| hypothetical protein VITISV_005356 [Vitis vinifera]   126   3e-27

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  176 bits (447), Expect = 2e-42
 Identities = 89/178 (50%), Positives = 121/178 (67%)
 Frame = +1

Query: 1   FLFKIITKLMQRRLNMIADKIITKEQVGFVPGRCSQSSIALASELMNELELKRNGGNIAM 180
           F FKII+K++  RL  I   I+++EQ GF+ GR  +  + LASE +N L+ K  GGN+A 
Sbjct: 200 FKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAF 259

Query: 181 KIDISQAYDTMSLEFLFKVLTALGFSQG*MQCLHSIFHSAQISIMVNGGPVGFFHMERGL 360
           K+DIS+A+DT++ +FL KVL   GFS+     + +I  SA++SI +NG   G+F   RG+
Sbjct: 260 KVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGV 319

Query: 361 KQGDPLSPLLFAIAEDVLSRGLTNLTVKKMLKPMVSLRGCPAPSHLFFADDIIIFANG 534
           +QGDPLSPLLF +AEDVLSR LT L  +  LK M   R C  PSH+ +ADDI+IF NG
Sbjct: 320 RQGDPLSPLLFCLAEDVLSRSLTKLVEQGKLKQMRGTRNCLVPSHILYADDIMIFCNG 377


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  170 bits (430), Expect = 2e-40
 Identities = 89/199 (44%), Positives = 125/199 (62%)
 Frame = +1

Query: 1    FLFKIITKLMQRRLNMIADKIITKEQVGFVPGRCSQSSIALASELMNELELKRNGGNIAM 180
            F FKII+K++  RL  I  +II+ EQ GF+  R     + LASE +N LE ++ GGN+A+
Sbjct: 526  FQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVAL 585

Query: 181  KIDISQAYDTMSLEFLFKVLTALGFSQG*MQCLHSIFHSAQISIMVNGGPVGFFHMERGL 360
            K+DI++A+DT+   FL  VL   GF +  +  +  I  SA++S++VNG  VGFF    G+
Sbjct: 586  KVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGV 645

Query: 361  KQGDPLSPLLFAIAEDVLSRGLTNLTVKKMLKPMVSLRGCPAPSHLFFADDIIIFANGHF 540
            +QGDPLSPLLF + E+VLSR L+       L PM   RG   P+H+ +ADD++IF  G  
Sbjct: 646  RQGDPLSPLLFCLVEEVLSRALSMAATDGQLIPMSYCRGVSFPTHILYADDVLIFCTGTK 705

Query: 541  RGIRHLNSLLERYQESSGQ 597
            R IR L  +  +Y E SGQ
Sbjct: 706  RNIRRLIKIFSQYSEVSGQ 724


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  164 bits (416), Expect = 8e-39
 Identities = 87/199 (43%), Positives = 126/199 (63%)
 Frame = +1

Query: 1   FLFKIITKLMQRRLNMIADKIITKEQVGFVPGRCSQSSIALASELMNELELKRNGGNIAM 180
           F FKII K++  RL  I   II+KEQ GFV GR  +  IAL SE +N L+ K  GGN+A+
Sbjct: 261 FKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLAL 320

Query: 181 KIDISQAYDTMSLEFLFKVLTALGFSQG*MQCLHSIFHSAQISIMVNGGPVGFFHMERGL 360
           KID+++A+DT++ +FL  VL   GF++     + +I HS+++ I +NG   GFF+  RG+
Sbjct: 321 KIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGV 380

Query: 361 KQGDPLSPLLFAIAEDVLSRGLTNLTVKKMLKPMVSLRGCPAPSHLFFADDIIIFANGHF 540
           +QGDPLSPLLF I E+VLSR ++ L  K ++  + + R    P H F+ DD+++F     
Sbjct: 381 RQGDPLSPLLFCIVEEVLSRSISILADKGLIDLIAASRNNCLPFHCFYVDDLMVFCKAKM 440

Query: 541 RGIRHLNSLLERYQESSGQ 597
             +  L SL  RY + SGQ
Sbjct: 441 SSLIVLKSLFTRYADCSGQ 459


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  137 bits (344), Expect = 2e-30
 Identities = 73/199 (36%), Positives = 113/199 (56%), Gaps = 2/199 (1%)
 Frame = +1

Query: 7    FKIITKLMQRRLNMIADKIITKEQVGFVPGRCSQSSIALASELMNELELKRN--GGNIAM 180
            +KII+K++ +RL      +I+  Q  FVPG+    ++ +A EL++ L+ +R    G +A+
Sbjct: 876  YKIISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAV 935

Query: 181  KIDISQAYDTMSLEFLFKVLTALGFSQG*MQCLHSIFHSAQISIMVNGGPVGFFHMERGL 360
            K DIS+AYD +   FL KV+  LGF+   ++ + +   S    +++NG P G     RG+
Sbjct: 936  KTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGI 995

Query: 361  KQGDPLSPLLFAIAEDVLSRGLTNLTVKKMLKPMVSLRGCPAPSHLFFADDIIIFANGHF 540
            +QGDPLSP LF    +VLS  L    V K +  M   + C A SHL FADD + F     
Sbjct: 996  RQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASN 1055

Query: 541  RGIRHLNSLLERYQESSGQ 597
            + I  L  + ++Y+E+SGQ
Sbjct: 1056 QNIEQLALIFKKYEEASGQ 1074


>emb|CAN76892.1| hypothetical protein VITISV_005356 [Vitis vinifera]
          Length = 1793

 Score =  126 bits (317), Expect = 3e-27
 Identities = 77/200 (38%), Positives = 108/200 (54%), Gaps = 2/200 (1%)
 Frame = +1

Query: 4    LFKIITKLMQRRLNMIADKIITKEQVGFVPGRCSQSSIALASELMNELELKRNG--GNIA 177
            +FKI +KL+  RL  + D ++++ Q  FVP R    SI +A E+++ L+ KR G  G  A
Sbjct: 1068 IFKIASKLLANRLKKVLDXVVSEAQSAFVPXRSITDSILIAHEVLHFLKRKREGRIGYXA 1127

Query: 178  MKIDISQAYDTMSLEFLFKVLTALGFSQG*MQCLHSIFHSAQISIMVNGGPVGFFHMERG 357
            +KIDIS+AYD +   +LF VL A+GFS   ++ +          +   G  +G  +  RG
Sbjct: 1128 LKIDISKAYDKLEWNYLFAVLEAMGFSSKWLEWMRMCVCXVSYKVXFGGELLGPIYPTRG 1187

Query: 358  LKQGDPLSPLLFAIAEDVLSRGLTNLTVKKMLKPMVSLRGCPAPSHLFFADDIIIFANGH 537
            L+QGD LSP LF +A + LS  L       +L      RG P  SHLFFAD+  +F    
Sbjct: 1188 LRQGDXLSPYLFILAAEGLSALLKQGERCGVLHGCSVARGAPXVSHLFFADBSYLFFKAT 1247

Query: 538  FRGIRHLNSLLERYQESSGQ 597
                R L  +L RYQ  SGQ
Sbjct: 1248 ESESRSLKQILLRYQNLSGQ 1267