BLASTX nr result

ID: Coptis23_contig00032471 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032471
         (244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515299.1| conserved hypothetical protein [Ricinus comm...    99   4e-19
ref|XP_002275655.1| PREDICTED: uncharacterized protein LOC100258...    99   5e-19
ref|XP_003591419.1| Multidrug resistance protein ABC transporter...    97   2e-18
ref|XP_002301506.1| multidrug resistance protein ABC transporter...    94   1e-17
gb|AFK39923.1| unknown [Lotus japonicus]                               89   4e-16

>ref|XP_002515299.1| conserved hypothetical protein [Ricinus communis]
           gi|223545779|gb|EEF47283.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 191

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 47/78 (60%), Positives = 61/78 (78%)
 Frame = +3

Query: 9   MGNYISNRKLNPGGKVILSDSRVHEFNEPVTAAELMLEHPQQVVVEFKSLFAGKKPIPLP 188
           MGNYI++R  N  GKVIL D  VH F++ +T AELMLE+PQQVVVEF+   + K+P PLP
Sbjct: 1   MGNYITSRSSNATGKVILPDGTVHAFDKSLTVAELMLEYPQQVVVEFQQNLSEKRPAPLP 60

Query: 189 ADKKLDTEKIYVMLHMKR 242
           ADKKL+ +K+Y++L MKR
Sbjct: 61  ADKKLEAKKVYLILPMKR 78


>ref|XP_002275655.1| PREDICTED: uncharacterized protein LOC100258949 [Vitis vinifera]
          Length = 196

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
 Frame = +3

Query: 9   MGNYISNRKLNPGGKVILSDSRVHEFNEPVTAAELMLEHPQQVVVEFKS--LFAGKKPIP 182
           MGNY+S R  +  GK++LSD  VHEF +PVT AELMLEHPQQVVVE  S     GK+P P
Sbjct: 1   MGNYVSFRSCSAAGKIVLSDGSVHEFIKPVTVAELMLEHPQQVVVELNSGKGSGGKRPSP 60

Query: 183 LPADKKLDTEKIYVMLHMKR 242
           LPAD KL+  K+Y+ML MKR
Sbjct: 61  LPADMKLEMGKVYLMLPMKR 80


>ref|XP_003591419.1| Multidrug resistance protein ABC transporter family protein
           [Medicago truncatula] gi|355480467|gb|AES61670.1|
           Multidrug resistance protein ABC transporter family
           protein [Medicago truncatula]
          Length = 192

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 46/78 (58%), Positives = 58/78 (74%)
 Frame = +3

Query: 9   MGNYISNRKLNPGGKVILSDSRVHEFNEPVTAAELMLEHPQQVVVEFKSLFAGKKPIPLP 188
           MGN +S R  +P GKV+  D  VHEF+E +T AELM++HPQ+VVVEF S    K+P PLP
Sbjct: 1   MGNQVSFRPSDPTGKVVFLDGSVHEFDEAITVAELMMDHPQKVVVEFHSAVNQKRPTPLP 60

Query: 189 ADKKLDTEKIYVMLHMKR 242
           ADKKLD  KIY+ML +K+
Sbjct: 61  ADKKLDMNKIYLMLPVKQ 78


>ref|XP_002301506.1| multidrug resistance protein ABC transporter family protein
           [Populus trichocarpa] gi|222843232|gb|EEE80779.1|
           multidrug resistance protein ABC transporter family
           protein [Populus trichocarpa]
          Length = 197

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 4/82 (4%)
 Frame = +3

Query: 9   MGNYI----SNRKLNPGGKVILSDSRVHEFNEPVTAAELMLEHPQQVVVEFKSLFAGKKP 176
           MGNYI    S+      G+VIL D +V EF+ P+TAAELMLE+PQQVVVEF S F  K+P
Sbjct: 1   MGNYITFPNSSNSAAGTGRVILWDGKVFEFDTPLTAAELMLEYPQQVVVEFHSDFTEKRP 60

Query: 177 IPLPADKKLDTEKIYVMLHMKR 242
            PLPADK+LD +K+Y+ML +KR
Sbjct: 61  APLPADKRLDLKKVYLMLPIKR 82


>gb|AFK39923.1| unknown [Lotus japonicus]
          Length = 196

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 48/80 (60%), Positives = 59/80 (73%), Gaps = 2/80 (2%)
 Frame = +3

Query: 9   MGNYISNRKLNPG-GKVILSDSRVHEFNEPVTAAELMLEHPQQVVVEFKS-LFAGKKPIP 182
           MGN+IS+   +   GK++  D  V EF++P+T AELMLEHPQQVVVEF S L   K+P P
Sbjct: 1   MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTP 60

Query: 183 LPADKKLDTEKIYVMLHMKR 242
           LPADKKL+ +K YVML MKR
Sbjct: 61  LPADKKLEMKKTYVMLPMKR 80


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