BLASTX nr result
ID: Coptis23_contig00032443
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00032443
(555 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat... 231 4e-59
ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|2... 225 4e-57
ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|2... 223 2e-56
ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat... 204 8e-51
ref|NP_196258.1| pentatricopeptide repeat-containing protein [Ar... 201 6e-50
>ref|XP_002269283.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Vitis vinifera]
Length = 1048
Score = 231 bits (590), Expect = 4e-59
Identities = 110/185 (59%), Positives = 143/185 (77%)
Frame = -1
Query: 555 CRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKAS 376
CR +I+DA EIV IMK+ VVD +YG II+GYLRRN++ KAFD+ ++M ESG+ P S
Sbjct: 391 CRADRITDAAEIVDIMKKRKVVDAKVYGIIISGYLRRNDIPKAFDVLQTMTESGYLPTIS 450
Query: 375 SYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESM 196
+YTELMQ+LFR +EY + CKLYDEML G++PD VA+TA+VAGH++ NH+ EAWKVF SM
Sbjct: 451 TYTELMQHLFRLNEYQKGCKLYDEMLERGVEPDSVAITAMVAGHVRQNHIFEAWKVFNSM 510
Query: 195 KEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEV 16
+E+G R T K YSV IKELCK RTDE +K++NEM+ SK+ +GDE+F + LEKKGE
Sbjct: 511 QERGIRATWKSYSVFIKELCKISRTDEVIKVLNEMQASKIIIGDEVFNWVISYLEKKGET 570
Query: 15 EKIDK 1
E + K
Sbjct: 571 EMVKK 575
Score = 102 bits (254), Expect = 4e-20
Identities = 59/180 (32%), Positives = 102/180 (56%), Gaps = 1/180 (0%)
Frame = -1
Query: 555 CRDGKISDALEIVSIMKQNHV-VDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKA 379
CR G++ +AL +V + V +D IYGS+++G LRR + +A + SMK+ G P
Sbjct: 849 CRAGRLEEALALVDEVGPERVTLDQYIYGSLVHGLLRRGRLKEALEKVDSMKQIGIHPTV 908
Query: 378 SSYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFES 199
YT L+ + F+ + +A + + +M G +P IV +AL+ GH+ + +A VF
Sbjct: 909 HVYTSLIVHFFKEKQMRKALETFQKMKEEGCEPTIVTYSALIRGHMAMGNFVDARNVFGL 968
Query: 198 MKEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 19
++ KG K YS+ I LCK +++EAL+L++EM +S + F+ + F L ++G+
Sbjct: 969 LQLKGPFPDFKTYSMFISCLCKVGKSEEALQLLSEMLDSGIIPSTINFRTVMFGLNREGK 1028
>ref|XP_002308333.1| predicted protein [Populus trichocarpa] gi|222854309|gb|EEE91856.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 225 bits (573), Expect = 4e-57
Identities = 106/184 (57%), Positives = 144/184 (78%)
Frame = -1
Query: 552 RDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKASS 373
R +I+DALEIV IMK+ VDG +YG IINGYLRRNE+ KA D+F+SMKE GH P S+
Sbjct: 391 RANRIADALEIVEIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTST 450
Query: 372 YTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMK 193
YTELMQ+LFRS+EY + C+LYDEML G++ D VA+ A+VAGH++ +H+ EAW+VFE+M+
Sbjct: 451 YTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETME 510
Query: 192 EKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVE 13
+KG + T K YS+ IKELCK LRTDE +K++ +M+ SKM + DEIF+ + +E+KGE++
Sbjct: 511 DKGIKPTWKSYSIFIKELCKVLRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMD 570
Query: 12 KIDK 1
I K
Sbjct: 571 NIRK 574
Score = 104 bits (259), Expect = 1e-20
Identities = 55/180 (30%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Frame = -1
Query: 555 CRDGKISDALEIVS-IMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKA 379
CR G + +AL +V + + +D + S+++G L++ + +A SMK+ G P
Sbjct: 848 CRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTV 907
Query: 378 SSYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFES 199
YT L+ + FR ++A ++++ M G +P IV +AL+ G++ +V EAW VF S
Sbjct: 908 HVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHS 967
Query: 198 MKEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 19
+K KG K YS+ + LC+A +++EAL+L+++M ++ + + F+ + F L ++G+
Sbjct: 968 LKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFFGLNREGK 1027
Score = 58.5 bits (140), Expect = 7e-07
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 507 KQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSE 334
++ ++ + + +I Y R A +F MK SG P S+Y L+ +L + +
Sbjct: 724 RRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRK 783
Query: 333 YNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSV 154
+EA K++ EM+ +G PD + + + + EA K +S+ + GF V YS+
Sbjct: 784 VDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPAS-YSL 842
Query: 153 AIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEK 10
I+ LC+A +EAL LV+++ K + + L +KG +E+
Sbjct: 843 YIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEE 890
>ref|XP_002333469.1| predicted protein [Populus trichocarpa] gi|222836989|gb|EEE75382.1|
predicted protein [Populus trichocarpa]
Length = 1048
Score = 223 bits (567), Expect = 2e-56
Identities = 105/184 (57%), Positives = 143/184 (77%)
Frame = -1
Query: 552 RDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKASS 373
R +I+DALEIV IMK+ VDG +YG IINGYLRRNE+ KA D+F+SMKE GH P S+
Sbjct: 391 RANRIADALEIVEIMKRKDFVDGKVYGIIINGYLRRNELSKALDLFQSMKEFGHLPTTST 450
Query: 372 YTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMK 193
YTELMQ+LFRS+EY + C+LYDEML G++ D VA+ A+VAGH++ +H+ EAW+VFE+M+
Sbjct: 451 YTELMQHLFRSNEYQKCCELYDEMLERGVEIDSVAVMAIVAGHVRQDHISEAWEVFETME 510
Query: 192 EKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVE 13
+KG + T K YS+ IKELCK RTDE +K++ +M+ SKM + DEIF+ + +E+KGE++
Sbjct: 511 DKGIKPTWKSYSIFIKELCKVSRTDEIIKVLGKMQASKMFICDEIFEWVISCMERKGEMD 570
Query: 12 KIDK 1
I K
Sbjct: 571 NIRK 574
Score = 104 bits (259), Expect = 1e-20
Identities = 55/180 (30%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Frame = -1
Query: 555 CRDGKISDALEIVS-IMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKA 379
CR G + +AL +V + + +D + S+++G L++ + +A SMK+ G P
Sbjct: 848 CRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEEALAKVDSMKQVGINPTV 907
Query: 378 SSYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFES 199
YT L+ + FR ++A ++++ M G +P IV +AL+ G++ +V EAW VF S
Sbjct: 908 HVYTSLIVHFFREKLASKALEIFESMKQEGCEPTIVTYSALIRGYMDTENVIEAWNVFHS 967
Query: 198 MKEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 19
+K KG K YS+ + LC+A +++EAL+L+++M ++ + + F+ + F L ++G+
Sbjct: 968 LKTKGPAPDFKTYSMFLSCLCRAGKSEEALQLLSDMVDNGIVPSNVNFRTVFFGLNREGK 1027
Score = 58.5 bits (140), Expect = 7e-07
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Frame = -1
Query: 507 KQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSE 334
++ ++ + + +I Y R A +F MK SG P S+Y L+ +L + +
Sbjct: 724 RRGFLIPPDTWAIMIMQYGRTGLTEIALKIFGEMKASGCNPNDSTYKYLIIFLCGRKGRK 783
Query: 333 YNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSV 154
+EA K++ EM+ +G PD + + + + EA K +S+ + GF V YS+
Sbjct: 784 VDEAIKIFREMIRAGHVPDKELVGTYLCCLCEVGKLLEARKSVDSLCKAGFTVPAS-YSL 842
Query: 153 AIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEK 10
I+ LC+A +EAL LV+++ K + + L +KG +E+
Sbjct: 843 YIRALCRAGMLEEALSLVDQVSTEKTTLDRYTHASLVHGLLQKGRLEE 890
>ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 204 bits (519), Expect = 8e-51
Identities = 96/185 (51%), Positives = 140/185 (75%)
Frame = -1
Query: 555 CRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKAS 376
C+ G+I+DALEIV IMK+ +VDG ++G IINGYL RN+V +A ++F+ MKESG P S
Sbjct: 376 CKAGRITDALEIVDIMKRRDMVDGRVHGIIINGYLGRNDVDRALEVFQCMKESGCVPTIS 435
Query: 375 SYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESM 196
+YTELM +LFR Y EAC LYDEML GI+PD+VA+TA+VAGH+ NH+ +AWK+F+SM
Sbjct: 436 TYTELMLHLFRLDRYEEACMLYDEMLGKGIKPDVVAITAMVAGHVSQNHISDAWKMFKSM 495
Query: 195 KEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEV 16
+ +G + T K ++V IKELCKA +TD+ +K+++EM+ SK ++ D++ + ++ KGE+
Sbjct: 496 ECQGIKPTWKSFAVFIKELCKASQTDDIVKVLHEMQASKSRIQDKVLDLVITWMKNKGEL 555
Query: 15 EKIDK 1
I+K
Sbjct: 556 TVIEK 560
Score = 105 bits (263), Expect = 4e-21
Identities = 55/180 (30%), Positives = 104/180 (57%), Gaps = 1/180 (0%)
Frame = -1
Query: 555 CRDGKISDALEI-VSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKA 379
CR GK+ +AL + + ++ ++D +GSI++G LR+ + +A MK++G TP
Sbjct: 833 CRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEALAKVDVMKQNGITPTI 892
Query: 378 SSYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFES 199
+T L+ + F+ + +A + ++EML SG +P IV +AL+ G++ +AW +F
Sbjct: 893 HVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFYR 952
Query: 198 MKEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 19
MK KG K YS+ + LCK +++E ++L++EM +S + F+ + + L ++G+
Sbjct: 953 MKLKGPFPDFKTYSMFLTCLCKVGKSEEGMRLISEMLDSGIVPSTINFRTVVYGLNREGK 1012
Score = 59.3 bits (142), Expect = 4e-07
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 2/168 (1%)
Frame = -1
Query: 507 KQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKASSYTELMQYLF--RSSE 334
+ ++ + + +I Y R A + F+ MK + P S+Y L+ L + +
Sbjct: 709 RNSYPITSETWTIMIMVYGRTGLTEMAMNCFKEMKADDYVPSRSTYKYLIIALCGRKGRK 768
Query: 333 YNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESMKEKGFRVTHKFYSV 154
++A K+Y EM+ +G PD + + + V +A + +S++ G+ V YS+
Sbjct: 769 VDDALKIYGEMISAGYVPDKELIETYLGCLCEVGRVLDARRCTDSLQNFGYTVPLS-YSL 827
Query: 153 AIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEVEK 10
I+ LC+A + +EAL L E+ K + F I L +KG +E+
Sbjct: 828 FIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEE 875
>ref|NP_196258.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171850|sp|Q9FNG8.1|PP366_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At5g06400, mitochondrial; Flags: Precursor
gi|9758420|dbj|BAB08962.1| unnamed protein product
[Arabidopsis thaliana] gi|332003627|gb|AED91010.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 1030
Score = 201 bits (511), Expect = 6e-50
Identities = 93/183 (50%), Positives = 135/183 (73%)
Frame = -1
Query: 555 CRDGKISDALEIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKAS 376
CR ++ DALEIV IMK+ + D N+YG II+GYLR+N+V KA + F +K+SG P+ S
Sbjct: 375 CRANRMVDALEIVDIMKRRKLDDSNVYGIIISGYLRQNDVSKALEQFEVIKKSGRPPRVS 434
Query: 375 SYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFESM 196
+YTE+MQ+LF+ ++ + C L++EM+ +GI+PD VA+TA+VAGH+ N V EAWKVF SM
Sbjct: 435 TYTEIMQHLFKLKQFEKGCNLFNEMIENGIEPDSVAITAVVAGHLGQNRVAEAWKVFSSM 494
Query: 195 KEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGEV 16
+EKG + T K YS+ +KELC++ R DE +K+ N+M SK+ + D+IF + ++EK GE
Sbjct: 495 EEKGIKPTWKSYSIFVKELCRSSRYDEIIKIFNQMHASKIVIRDDIFSWVISSMEKNGEK 554
Query: 15 EKI 7
EKI
Sbjct: 555 EKI 557
Score = 114 bits (285), Expect = 1e-23
Identities = 60/180 (33%), Positives = 101/180 (56%), Gaps = 1/180 (0%)
Frame = -1
Query: 555 CRDGKISDAL-EIVSIMKQNHVVDGNIYGSIINGYLRRNEVCKAFDMFRSMKESGHTPKA 379
CR GK+ +AL E+ S + ++D YGSI++G L+R ++ KA D SMKE G P
Sbjct: 830 CRIGKLEEALSELASFEGERSLLDQYTYGSIVHGLLQRGDLQKALDKVNSMKEIGTKPGV 889
Query: 378 SSYTELMQYLFRSSEYNEACKLYDEML*SGIQPDIVAMTALVAGHIQNNHVPEAWKVFES 199
YT L+ Y F+ + + + +M +P +V TA++ G++ V EAW F +
Sbjct: 890 HVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRN 949
Query: 198 MKEKGFRVTHKFYSVAIKELCKALRTDEALKLVNEMRNSKMKVGDEIFQGITFALEKKGE 19
M+E+G K YS I LC+A ++++ALKL++EM + + F+ + + L ++G+
Sbjct: 950 MEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGK 1009