BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032410
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containi...    86   2e-15
ref|XP_002521729.1| pentatricopeptide repeat-containing protein,...    71   1e-10
ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|2...    66   3e-09
ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containi...    61   1e-07
ref|XP_003612374.1| Pentatricopeptide repeat-containing protein ...    57   2e-06

>ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 3/79 (3%)
 Frame = +3

Query: 9   KPCTQSMPNINKSLKLPIF---SKFHLSSLLRFQSRLISSTLVPTHEHISHLILDQNSHT 179
           +  ++SM NI+K  KL +F   S    SS++  QS+ IS+T VPTH+HI+HLIL+Q S +
Sbjct: 49  RKASKSMFNISKYAKLIMFCNVSNIGRSSVVNLQSKPISTTPVPTHQHIAHLILEQKSAS 108

Query: 180 QALQTFRWASKLPNFTHNQ 236
           QALQTFRWAS LPNF HNQ
Sbjct: 109 QALQTFRWASNLPNFIHNQ 127


>ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539120|gb|EEF40716.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 629

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
 Frame = +3

Query: 27  MPNINKSLKLPIFSK--FHLSSLLRFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFR 200
           MP +   LKL   +     +    R+ S    S  VP+H+HI+HLILDQNS T+ALQTF+
Sbjct: 1   MPKLFPPLKLKATASKLLDIFQFRRYSSSSTPSLSVPSHQHIAHLILDQNSATKALQTFK 60

Query: 201 WASKLPNFTHNQ 236
           WAS LP FTH+Q
Sbjct: 61  WASNLPKFTHSQ 72


>ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1|
           predicted protein [Populus trichocarpa]
          Length = 584

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/40 (77%), Positives = 32/40 (80%)
 Frame = +3

Query: 117 STLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQ 236
           S  VPTHE I HLILDQ S  QALQTF WASKLPNFTH+Q
Sbjct: 9   SLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQ 48


>ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525,
           mitochondrial-like [Glycine max]
          Length = 618

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/70 (44%), Positives = 43/70 (61%)
 Frame = +3

Query: 27  MPNINKSLKLPIFSKFHLSSLLRFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFRWA 206
           M  + K+   P  S  H     +FQ+   SS+  P+ EH+S LILDQ S ++AL+ FRWA
Sbjct: 1   MRKLWKAFAYPTSSPTHFLRRFQFQTHSSSSS-APSQEHVSQLILDQKSASEALEYFRWA 59

Query: 207 SKLPNFTHNQ 236
           S +PNF H+Q
Sbjct: 60  STVPNFVHSQ 69


>ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513709|gb|AES95332.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +3

Query: 63  FSKFHLSSLLRFQSRLISSTLVPTHEHISHLILDQNSHTQALQTFRWASKLPNFTHNQ 236
           F K+H      + S   SS+L PT +H+  LILDQ + ++ALQTFRWAS    FTH+Q
Sbjct: 17  FLKYHSHFQSHYSS---SSSLPPTQDHLCQLILDQKTSSEALQTFRWASTFSKFTHSQ 71