BLASTX nr result

ID: Coptis23_contig00032394 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032394
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529976.1| conserved hypothetical protein [Ricinus comm...    59   4e-07
ref|XP_002880262.1| hypothetical protein ARALYDRAFT_904144 [Arab...    58   9e-07
emb|CAZ68132.1| hypothetical protein [Arabidopsis halleri subsp....    58   9e-07
ref|NP_001237512.1| uncharacterized protein LOC100500403 [Glycin...    57   2e-06
ref|NP_566084.1| uncharacterized protein [Arabidopsis thaliana] ...    55   5e-06

>ref|XP_002529976.1| conserved hypothetical protein [Ricinus communis]
           gi|223530538|gb|EEF32419.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 150

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
 Frame = -3

Query: 311 QTNSRRNEKKMKDKAETTTGTLSGSDVLLALQRATKDRSRSKERKK--------IXXXXX 156
           Q   +++E+K K++    T  LSG DVL A+Q+A  +++R+   K+              
Sbjct: 51  QKLQKQDEEKQKERG-AVTNQLSGIDVLWAMQKAAAEKNRTSNSKRNRKRDGLISASGQK 109

Query: 155 XXXXXXGIVDYGQVKPLNVKIDWGDRLDELEKHLQEL 45
                   VDY  V+PL +K DWG RLD LEK L EL
Sbjct: 110 EKEKEKDAVDYSNVRPLCIKSDWGPRLDRLEKRLNEL 146


>ref|XP_002880262.1| hypothetical protein ARALYDRAFT_904144 [Arabidopsis lyrata subsp.
           lyrata] gi|297326101|gb|EFH56521.1| hypothetical protein
           ARALYDRAFT_904144 [Arabidopsis lyrata subsp. lyrata]
          Length = 159

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
 Frame = -3

Query: 386 PFSKTNTNFVGSMGRIVLTKVEPLLQTNSRRNEKKMKDKAETTTGTLSGSDVLLALQRAT 207
           P     +  VG +G+ +L      L+T      K +  + E     +SGSDVL A+QRAT
Sbjct: 44  PTKSQTSESVGGLGQQIL------LRTADSNPSKPIPKEKE-----ISGSDVLWAIQRAT 92

Query: 206 KDRSRS----KERKKIXXXXXXXXXXXGI----VDYGQVKPLNVKIDWGDRLDELEKHLQ 51
             R R+    K+ KKI                 VDY  V PL +K DWG RL+E EK L+
Sbjct: 93  AQRKRTNAGKKKMKKIRGVELSSSAGESTEDNGVDYSNVAPLRIKSDWGHRLEEFEKLLK 152

Query: 50  ELK 42
           E +
Sbjct: 153 EFQ 155


>emb|CAZ68132.1| hypothetical protein [Arabidopsis halleri subsp. halleri]
          Length = 159

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
 Frame = -3

Query: 386 PFSKTNTNFVGSMGRIVLTKVEPLLQTNSRRNEKKMKDKAETTTGTLSGSDVLLALQRAT 207
           P     +  VG +G+ +L      L+T      K +  + E     +SGSDVL A+QRAT
Sbjct: 44  PTKSQTSESVGGLGQQIL------LRTADSNPSKPIPKEKE-----ISGSDVLWAIQRAT 92

Query: 206 KDRSRS----KERKKIXXXXXXXXXXXGI----VDYGQVKPLNVKIDWGDRLDELEKHLQ 51
             R R+    K+ KKI                 VDY  V PL +K DWG RL+E EK L+
Sbjct: 93  AQRKRTNAGKKKTKKIRGVELSSSAGESTGDNGVDYSNVAPLRIKSDWGHRLEEFEKLLK 152

Query: 50  ELK 42
           E +
Sbjct: 153 EFQ 155


>ref|NP_001237512.1| uncharacterized protein LOC100500403 [Glycine max]
           gi|255630242|gb|ACU15476.1| unknown [Glycine max]
          Length = 141

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
 Frame = -3

Query: 272 KAETTTGTLSGSDVLLALQRAT--KDRSRSKERKKIXXXXXXXXXXXGIVDYGQVKPLNV 99
           KA    G +SGSDVL ALQRA+  K++ ++K+  +              V+Y  V+PL +
Sbjct: 60  KAAQEEGEISGSDVLWALQRASARKNKKKNKKEHRRDSSSVVTPTEETAVNYTNVRPLRI 119

Query: 98  KIDWGDRLDELEKHLQEL 45
             +WG +LDE +K L+EL
Sbjct: 120 NANWGSKLDEFDKRLREL 137


>ref|NP_566084.1| uncharacterized protein [Arabidopsis thaliana]
           gi|17978987|gb|AAL47454.1| At2g46730/F19D11.1
           [Arabidopsis thaliana] gi|20197318|gb|AAM15019.1|
           Expressed protein [Arabidopsis thaliana]
           gi|21360425|gb|AAM47328.1| At2g46730/F19D11.1
           [Arabidopsis thaliana] gi|21536604|gb|AAM60936.1|
           unknown [Arabidopsis thaliana]
           gi|330255652|gb|AEC10746.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 160

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
 Frame = -3

Query: 386 PFSKTNTNFVGSMGRIVLTKVEPLLQTNSRRNEKKMKDKAETTTGTLSGSDVLLALQRAT 207
           P     +  VG +G+ +L +    + +N R+   K  +        +SGSDVL A+QRAT
Sbjct: 44  PTKSQTSESVGGLGQQILLRT---VDSNPRKPIPKETE--------ISGSDVLWAIQRAT 92

Query: 206 KDRSRSKERKKIXXXXXXXXXXXGI---------VDYGQVKPLNVKIDWGDRLDELEKHL 54
             R R+   KK                       VDY  V PL +K DWG RL+E EK L
Sbjct: 93  AQRKRTNAGKKKTKNRLSGVELSSSAGEPTGDNGVDYSNVTPLRIKSDWGHRLEEFEKLL 152

Query: 53  QELK 42
           +E +
Sbjct: 153 KEFQ 156


Top