BLASTX nr result
ID: Coptis23_contig00032332
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00032332
(333 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI38165.3| unnamed protein product [Vitis vinifera] 178 5e-43
ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containi... 178 5e-43
ref|XP_002517667.1| pentatricopeptide repeat-containing protein,... 177 1e-42
ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containi... 165 4e-39
ref|XP_003602631.1| Pentatricopeptide repeat-containing protein ... 159 2e-37
>emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 178 bits (451), Expect = 5e-43
Identities = 80/111 (72%), Positives = 96/111 (86%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKN 180
+L+ CL+++S R + VHARI+ TQF+ EIFIQNRLIDVY KC CL D+RKLFD+MP +N
Sbjct: 21 LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRN 80
Query: 181 TFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
TFTWNS+I+ LTKSGF+DEA +LF SMPEPDQCSWNSMVSGFAQHD FEE+
Sbjct: 81 TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131
Score = 78.2 bits (191), Expect = 6e-13
Identities = 31/112 (27%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHK 177
+++ C ++++ ++HAR++KT +F ++ + N L+D+YAKC + ++R++FD+M +
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Query: 178 NTFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
N + S+++ ++ + A +F+ M + + SWN++++G+ Q+ EEA
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365
Score = 70.9 bits (172), Expect = 1e-10
Identities = 35/106 (33%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L+ C + T+VHA + K+++++++++ + LID+Y+KCG + + ++F M +N
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNL 213
Query: 184 FTWNSIITALTKSGFIDEAFKLF----NSMPEPDQCSWNSMVSGFA 309
TWNS+IT ++G EA ++F +S EPD+ + S+VS A
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259
Score = 62.4 bits (150), Expect = 4e-08
Identities = 30/86 (34%), Positives = 52/86 (60%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L + LK +SI + ++K S+IF+ N LID+Y KCG ++D ++F+KM ++
Sbjct: 368 LFRLLKRESIWPTHYTFGNLLK----SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDC 423
Query: 184 FTWNSIITALTKSGFIDEAFKLFNSM 261
+WN+II ++G+ EA ++F M
Sbjct: 424 VSWNAIIVGYAQNGYGAEALQIFRKM 449
>ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 178 bits (451), Expect = 5e-43
Identities = 80/111 (72%), Positives = 96/111 (86%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKN 180
+L+ CL+++S R + VHARI+ TQF+ EIFIQNRLIDVY KC CL D+RKLFD+MP +N
Sbjct: 21 LLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQRN 80
Query: 181 TFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
TFTWNS+I+ LTKSGF+DEA +LF SMPEPDQCSWNSMVSGFAQHD FEE+
Sbjct: 81 TFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEES 131
Score = 78.2 bits (191), Expect = 6e-13
Identities = 31/112 (27%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHK 177
+++ C ++++ ++HAR++KT +F ++ + N L+D+YAKC + ++R++FD+M +
Sbjct: 254 VVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313
Query: 178 NTFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
N + S+++ ++ + A +F+ M + + SWN++++G+ Q+ EEA
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEA 365
Score = 70.9 bits (172), Expect = 1e-10
Identities = 35/106 (33%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L+ C + T+VHA + K+++++++++ + LID+Y+KCG + + ++F M +N
Sbjct: 154 LSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNL 213
Query: 184 FTWNSIITALTKSGFIDEAFKLF----NSMPEPDQCSWNSMVSGFA 309
TWNS+IT ++G EA ++F +S EPD+ + S+VS A
Sbjct: 214 VTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259
Score = 64.7 bits (156), Expect = 7e-09
Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFA------SEIFIQNRLIDVYAKCGCLKDSRKLFD 162
+L+ C + + H ++K F S+IF+ N LID+Y KCG ++D ++F+
Sbjct: 387 LLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFE 446
Query: 163 KMPHKNTFTWNSIITALTKSGFIDEAFKLFNSM 261
KM ++ +WN+II ++G+ EA ++F M
Sbjct: 447 KMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 479
>ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543299|gb|EEF44831.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 628
Score = 177 bits (448), Expect = 1e-42
Identities = 75/111 (67%), Positives = 96/111 (86%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKN 180
+L+ CLK+KS+RD+ ++HARI+KTQFA E+FIQNRLID Y KCGC D+RK+FD+MP KN
Sbjct: 25 LLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQMPEKN 84
Query: 181 TFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
F+WN+I++ L KSGF+DE +LF SMPEPDQCSWNS+++GFAQHD FEEA
Sbjct: 85 VFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEA 135
Score = 76.6 bits (187), Expect = 2e-12
Identities = 33/112 (29%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHK 177
+++ C + + ++HA ++K + ++ + N L+D+YAKCG + ++R +FD+MP +
Sbjct: 258 VVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARCVFDRMPIR 317
Query: 178 NTFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
N + S+++ K+ + A LF M E + SWN++++G+ Q+ EEA
Sbjct: 318 NVVSETSMVSGYAKTASVKAARLLFTKMIERNVVSWNALIAGYTQNGENEEA 369
Score = 75.5 bits (184), Expect = 4e-12
Identities = 36/106 (33%), Positives = 66/106 (62%), Gaps = 4/106 (3%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L+ C K ++ T++H ++K+QF ++++ + LID+Y+KCG + ++++FD M +N
Sbjct: 158 LSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNV 217
Query: 184 FTWNSIITALTKSGFIDEAFKLFNSMP----EPDQCSWNSMVSGFA 309
+WNS+IT ++G EA ++F M EPD+ + S+VS A
Sbjct: 218 VSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACA 263
Score = 61.6 bits (148), Expect = 6e-08
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFA------SEIFIQNRLIDVYAKCGCLKDSRKLFD 162
+LN C ++ + HA ++K F S++F+ N LID+Y KCG +++ ++F+
Sbjct: 391 LLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFE 450
Query: 163 KMPHKNTFTWNSIITALTKSGFIDEAFKLFNSM 261
M ++ +WN++I ++G+ EA LF M
Sbjct: 451 NMVERDYVSWNAMIVGYAQNGYGMEALGLFRKM 483
>ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 165 bits (417), Expect = 4e-39
Identities = 71/111 (63%), Positives = 96/111 (86%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKN 180
+L+ C+++KS D+ ++HARI+KTQF+SEIFIQNRL+D Y KCG +D+RK+FD+MP +N
Sbjct: 25 LLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRN 84
Query: 181 TFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
TF++N++++ LTK G +DEAF +F SMPEPDQCSWN+MVSGFAQHD FEEA
Sbjct: 85 TFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135
Score = 79.7 bits (195), Expect = 2e-13
Identities = 33/112 (29%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKT-QFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHK 177
+++ C +IR+ ++HAR++K ++ +++ + N L+D+YAKC + ++R +FD+MP +
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 178 NTFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
N + S++ ++ + A +F++M E + SWN++++G+ Q+ EEA
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEA 369
Score = 65.1 bits (157), Expect = 6e-09
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 4/113 (3%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L+ C + ++HA I K+++ ++++ + L+D+Y+KCG + +++ FD M +N
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNI 217
Query: 184 FTWNSIITALTKSGFIDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEE 330
+WNS+IT ++G +A ++F M EPD+ + S+VS A E
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIRE 270
Score = 62.8 bits (151), Expect = 3e-08
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQF------ASEIFIQNRLIDVYAKCGCLKDSRKLFD 162
+LN C ++ + H +I+K F S+IF+ N LID+Y KCG ++D +F+
Sbjct: 391 LLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFE 450
Query: 163 KMPHKNTFTWNSIITALTKSGFIDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEE 330
+M ++ +WN++I ++G+ A ++F M +PD + ++S + EE
Sbjct: 451 RMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEE 510
>ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 705
Score = 159 bits (402), Expect = 2e-37
Identities = 72/111 (64%), Positives = 92/111 (82%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKN 180
+L+ C+K+KS+ ++ VHARI+KTQF+SEIFIQNRL+DVY KCG L+D+RK+FD M +N
Sbjct: 25 LLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRN 84
Query: 181 TFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
TF+WN+++ ALTK G +DEA LF MPE DQCSWN+MVSGFAQ D FEEA
Sbjct: 85 TFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEA 135
Score = 80.5 bits (197), Expect = 1e-13
Identities = 34/112 (30%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMK-TQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHK 177
+ + C +IR+ ++HAR+MK ++ +++ + N L+D+YAKC + ++R +FD+MP +
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317
Query: 178 NTFTWNSIITALTKSGFIDEAFKLFNSMPEPDQCSWNSMVSGFAQHDHFEEA 333
+ + S+++ K+ + A +F++M E + SWN++++G+ Q+ EEA
Sbjct: 318 DVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEA 369
Score = 66.2 bits (160), Expect = 3e-09
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Frame = +1
Query: 1 ILNKCLKTKSIRDSTKVHARIMKTQF------ASEIFIQNRLIDVYAKCGCLKDSRKLFD 162
+LN C ++ + H I+K F S+IF+ N LID+Y KCG ++D R +F+
Sbjct: 391 LLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFE 450
Query: 163 KMPHKNTFTWNSIITALTKSGFIDEAFKLFNSM----PEPDQCSWNSMVSGFAQHDHFEE 330
+M ++ +WN++I ++G+ EA ++F M PD + ++S + EE
Sbjct: 451 RMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEE 510
Score = 60.8 bits (146), Expect = 1e-07
Identities = 29/106 (27%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Frame = +1
Query: 4 LNKCLKTKSIRDSTKVHARIMKTQFASEIFIQNRLIDVYAKCGCLKDSRKLFDKMPHKNT 183
L+ C + ++H I K++++ ++++ + L+D+Y+KC + +++ FD M +N
Sbjct: 158 LSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNI 217
Query: 184 FTWNSIITALTKSGFIDEAFKLF----NSMPEPDQCSWNSMVSGFA 309
+WNS+IT ++G +A ++F N EPD+ + S+ S A
Sbjct: 218 VSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACA 263