BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032310
         (363 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   149   3e-34
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   140   1e-31
emb|CBI34757.3| unnamed protein product [Vitis vinifera]              140   1e-31
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   140   1e-31
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   138   4e-31

>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  149 bits (375), Expect = 3e-34
 Identities = 69/120 (57%), Positives = 90/120 (75%)
 Frame = -3

Query: 361 VKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLS 182
           +KDVVL KR DNSFRMVVVGDPN+K  EIG+P  I ++L   E L   NW+KL+ CC + 
Sbjct: 316 IKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCCEVR 375

Query: 181 ILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRV 2
           +LE+G    RR+   + +R   +L+IGDI+YR L++GD +L+NRPPSIHQHSLIALSV+V
Sbjct: 376 LLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKV 435


>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  140 bits (352), Expect = 1e-31
 Identities = 65/120 (54%), Positives = 91/120 (75%)
 Frame = -3

Query: 361 VKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLS 182
           +K+V+L KRT++SFRM+VVGDP ++L EIG+P  I ++L+  E LN  NWEK+ + C L 
Sbjct: 343 IKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLR 402

Query: 181 ILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRV 2
           +LE+GQ   RRK     +R  +D + GDI+YR L +GD++L+NRPPSIHQHS+IALSV+V
Sbjct: 403 LLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKV 462


>emb|CBI34757.3| unnamed protein product [Vitis vinifera]
          Length = 1359

 Score =  140 bits (352), Expect = 1e-31
 Identities = 65/120 (54%), Positives = 91/120 (75%)
 Frame = -3

Query: 361 VKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLS 182
           +K+V+L KRT++SFRM+VVGDP ++L EIG+P  I ++L+  E LN  NWEK+ + C L 
Sbjct: 286 IKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLR 345

Query: 181 ILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRV 2
           +LE+GQ   RRK     +R  +D + GDI+YR L +GD++L+NRPPSIHQHS+IALSV+V
Sbjct: 346 LLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKV 405


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  140 bits (352), Expect = 1e-31
 Identities = 65/120 (54%), Positives = 91/120 (75%)
 Frame = -3

Query: 361 VKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLS 182
           +K+V+L KRT++SFRM+VVGDP ++L EIG+P  I ++L+  E LN  NWEK+ + C L 
Sbjct: 313 IKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLR 372

Query: 181 ILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRV 2
           +LE+GQ   RRK     +R  +D + GDI+YR L +GD++L+NRPPSIHQHS+IALSV+V
Sbjct: 373 LLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKV 432


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score =  138 bits (348), Expect = 4e-31
 Identities = 65/120 (54%), Positives = 91/120 (75%)
 Frame = -3

Query: 361 VKDVVLAKRTDNSFRMVVVGDPNVKLGEIGMPREICQKLIFPETLNEQNWEKLHDCCRLS 182
           +KDVVL KR D+SFRMV+VGDP+++L EIG+P  I ++L   E+L   NWEKL+ C   S
Sbjct: 349 IKDVVLGKRNDHSFRMVIVGDPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKS 408

Query: 181 ILERGQFRARRKDDTIVLRNEDDLKIGDIVYRHLDEGDLLLLNRPPSIHQHSLIALSVRV 2
             E+G    RR+ + + +R+  +L++GDI+YR L++GD +L+NRPPSIHQHSLIALSV+V
Sbjct: 409 RFEKGDMHVRREGNLVRVRHMKELRLGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKV 468