BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032307
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [C...   105   5e-21
ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis s...   105   5e-21
gb|AFB18329.1| RNA polymerase beta subunit [Molineria capitulata]     104   7e-21
ref|YP_001004178.1| RNA polymerase beta subunit [Ranunculus macr...   104   9e-21
ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea] ...   103   1e-20

>ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
            gi|340536631|gb|AEK48398.1| RNA polymerase beta subunit
            (chloroplast) [Colocasia esculenta]
            gi|340536718|gb|AEK48484.1| RNA polymerase beta subunit
            (chloroplast) [Colocasia esculenta]
          Length = 1072

 Score =  105 bits (261), Expect = 5e-21
 Identities = 52/54 (96%), Positives = 54/54 (100%)
 Frame = +3

Query: 3    QEVLGTTIVGGTISNPEDAPESFRLLVQELRSLALELNHFLVSEKNFQINRKEA 164
            QEVLGTTI+GGTISNPEDAPESFRLLV+ELRSLALELNHFLVSEKNFQINRKEA
Sbjct: 1019 QEVLGTTIIGGTISNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA 1072


>ref|YP_002836082.1| RNA polymerase beta subunit [Megaleranthis saniculifolia]
            gi|226933874|gb|ACO92007.1| RNA polymerase beta subunit
            [Megaleranthis saniculifolia]
          Length = 1071

 Score =  105 bits (261), Expect = 5e-21
 Identities = 52/54 (96%), Positives = 54/54 (100%)
 Frame = +3

Query: 3    QEVLGTTIVGGTISNPEDAPESFRLLVQELRSLALELNHFLVSEKNFQINRKEA 164
            QEVLGTTI+GGTISNPEDAPESFRLLV+ELRSLALELNHFLVSEKNFQINRKEA
Sbjct: 1018 QEVLGTTIIGGTISNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA 1071


>gb|AFB18329.1| RNA polymerase beta subunit [Molineria capitulata]
          Length = 1070

 Score =  104 bits (260), Expect = 7e-21
 Identities = 51/54 (94%), Positives = 54/54 (100%)
 Frame = +3

Query: 3    QEVLGTTIVGGTISNPEDAPESFRLLVQELRSLALELNHFLVSEKNFQINRKEA 164
            QEVLGTTI+GGT+SNPEDAPESFRLLV+ELRSLALELNHFLVSEKNFQINRKEA
Sbjct: 1017 QEVLGTTIIGGTVSNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA 1070


>ref|YP_001004178.1| RNA polymerase beta subunit [Ranunculus macranthus]
            gi|69216920|gb|AAZ03994.1| RNA polymerase beta chain
            [Ranunculus macranthus] gi|85540796|gb|ABC70748.1| RNA
            polymerase beta subunit [Ranunculus macranthus]
          Length = 1070

 Score =  104 bits (259), Expect = 9e-21
 Identities = 52/54 (96%), Positives = 54/54 (100%)
 Frame = +3

Query: 3    QEVLGTTIVGGTISNPEDAPESFRLLVQELRSLALELNHFLVSEKNFQINRKEA 164
            QEVLGTTI+GGTISNPEDAPESFRLLV+ELRSLALELNHFLVSEKNFQINRKEA
Sbjct: 1017 QEVLGTTIMGGTISNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA 1070


>ref|YP_004563859.1| RNA polymerase beta subunit [Nelumbo lutea]
            gi|224474126|gb|ACN49315.1| RNA polymerase beta subunit
            [Nelumbo lutea] gi|383286884|gb|AFH01533.1| RNA
            polymerase beta subunit (chloroplast) [Nelumbo lutea]
          Length = 1070

 Score =  103 bits (258), Expect = 1e-20
 Identities = 51/54 (94%), Positives = 54/54 (100%)
 Frame = +3

Query: 3    QEVLGTTIVGGTISNPEDAPESFRLLVQELRSLALELNHFLVSEKNFQINRKEA 164
            QEVLGTTI+GGTI+NPEDAPESFRLLV+ELRSLALELNHFLVSEKNFQINRKEA
Sbjct: 1017 QEVLGTTIIGGTITNPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA 1070