BLASTX nr result
ID: Coptis23_contig00032160
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00032160
(328 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containi... 139 3e-31
emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera] 139 3e-31
ref|XP_002513375.1| pentatricopeptide repeat-containing protein,... 115 5e-24
ref|XP_002310674.1| predicted protein [Populus trichocarpa] gi|2... 114 8e-24
ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containi... 114 1e-23
>ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 139 bits (349), Expect = 3e-31
Identities = 63/109 (57%), Positives = 78/109 (71%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+TMYAKCGDLNSSN+IF+ L ++ ++WNAM+AANAHHGCGE+ALK+F +M ++ DQ
Sbjct: 1293 ITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 1352
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
QQLH L+IK GF+SDLHVTNAAMDMYGKCG
Sbjct: 1353 FSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 1401
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/109 (22%), Positives = 54/109 (49%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
++M++ + + ++F+ ++ + +SWNAMI+A AHHG ++L+ F M + +
Sbjct: 989 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+ +H L++K G DS++ + N + +Y + G
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAG 1097
>emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 139 bits (349), Expect = 3e-31
Identities = 63/109 (57%), Positives = 78/109 (71%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+TMYAKCGDLNSSN+IF+ L ++ ++WNAM+AANAHHGCGE+ALK+F +M ++ DQ
Sbjct: 643 ITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQ 702
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
QQLH L+IK GF+SDLHVTNAAMDMYGKCG
Sbjct: 703 FSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 751
Score = 57.8 bits (138), Expect = 9e-07
Identities = 25/109 (22%), Positives = 54/109 (49%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
++M++ + + ++F+ ++ + +SWNAMI+A AHHG ++L+ F M + +
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+ +H L++K G DS++ + N + +Y + G
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAG 447
>ref|XP_002513375.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547283|gb|EEF48778.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 922
Score = 115 bits (287), Expect = 5e-24
Identities = 58/109 (53%), Positives = 70/109 (64%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+TMYAKCGDLNSSN IF+ L +NAV+WN ++AANA+HG E++LKL KM A +D DQ
Sbjct: 761 ITMYAKCGDLNSSNCIFDGLINKNAVAWNTVMAANAYHGQMEESLKLLVKMRHAGVDLDQ 820
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
QQL +L +K GFDSD VTNA MDMY KCG
Sbjct: 821 FSFSGCLSATATLAMLEEGQQLQSLAVKLGFDSDPFVTNALMDMYAKCG 869
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/109 (26%), Positives = 52/109 (47%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+ MY+ G ++ +F+++ ++ +SWN+M+A A G DALK+F ++ + +
Sbjct: 559 IAMYSGAGKSEHADLVFQKMAERDLISWNSMLACYAQDGKSLDALKIFTRIFHMKKGANF 618
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+ LH L+I TG L V+NA + +Y K G
Sbjct: 619 VTFTSALAACSDPDFIAEGRILHALVILTGLHESLIVSNALVTLYAKSG 667
>ref|XP_002310674.1| predicted protein [Populus trichocarpa] gi|222853577|gb|EEE91124.1|
predicted protein [Populus trichocarpa]
Length = 908
Score = 114 bits (285), Expect = 8e-24
Identities = 57/109 (52%), Positives = 71/109 (65%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+TMYAKCGDLNSSN IF+RL ++NA +WNAM+AANAHHG E+ALK +M RA ++ D+
Sbjct: 477 ITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDE 536
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
QQLH L +K G DS+ V +A MDMYGKCG
Sbjct: 537 FSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCG 585
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/109 (22%), Positives = 55/109 (50%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
++M+ G + + ++F +D + +SWN+MIAA +G +++L+ F+ M R + +
Sbjct: 173 ISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINS 232
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+ +H+L++K G++S++ +N + MY G
Sbjct: 233 TTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAG 281
Score = 55.1 bits (131), Expect = 6e-06
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+T+YAK G + + +F+ + ++ V+WNA+I +A ++ALK F M + +
Sbjct: 375 VTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINY 434
Query: 181 -XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+H II TGF SD +V N+ + MY KCG
Sbjct: 435 ITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCG 484
>ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 114 bits (284), Expect = 1e-23
Identities = 55/109 (50%), Positives = 73/109 (66%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
+TMYA+CGDLN+SN+IF+ L +N+ +WNA+++ANAH+G GE+ALKL KM + DQ
Sbjct: 503 ITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQ 562
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
QQLH+LIIK GF+S+ +V NA MDMYGKCG
Sbjct: 563 FSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCG 611
Score = 60.1 bits (144), Expect = 2e-07
Identities = 25/109 (22%), Positives = 56/109 (51%)
Frame = +1
Query: 1 LTMYAKCGDLNSSNFIFERLDTQNAVSWNAMIAANAHHGCGEDALKLFAKMHRARLDFDQ 180
++M+ C + ++ +F+ + ++ +SWN++I A+ H+G E +L+ F++M D
Sbjct: 202 ISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDY 261
Query: 181 XXXXXXXXXXXXXXXXXXXQQLHNLIIKTGFDSDLHVTNAAMDMYGKCG 327
+ LH +++K+G +S++ V N+ + MY + G
Sbjct: 262 ITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAG 310