BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032155
         (899 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containi...   285   1e-74
ref|XP_002325338.1| predicted protein [Populus trichocarpa] gi|2...   280   2e-73
ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containi...   255   1e-65
ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containi...   254   2e-65
ref|XP_002892464.1| pentatricopeptide repeat-containing protein ...   244   2e-62

>ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08610-like [Vitis vinifera]
          Length = 498

 Score =  285 bits (729), Expect = 1e-74
 Identities = 143/232 (61%), Positives = 174/232 (75%)
 Frame = +2

Query: 2   WDEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNT 181
           WDEVD IL IM  TS PPT +TYNILINGLCK+GLLDRA+++ D+MV     PDIITYNT
Sbjct: 265 WDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNT 324

Query: 182 LLGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKG 361
           LL ALCKEGM D+AL +LHSL +  CSP LITYN VIDGL ++  MEKAM LY EMIE+G
Sbjct: 325 LLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERG 384

Query: 362 VSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGI 541
            +PDDIT+R+L W   R DLV +A+ IL+EMN RN RI    +  VI GLCK  +VD+ I
Sbjct: 385 FAPDDITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCKKKKVDIAI 444

Query: 542 EFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEESM 697
           + LEMM+SS  KP+E IY+ ++KGV A+GM EEA  L +KL E KV +EE+M
Sbjct: 445 QVLEMMVSSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLTELKVFREETM 496



 Score =  128 bits (322), Expect = 2e-27
 Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 35/250 (14%)
 Frame = +2

Query: 20  ILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGAL- 196
           +L IM+ +   P  ITYN+L+ GLCK GLL  A++ LD M   G  PD ITYNT+L  + 
Sbjct: 96  VLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMF 155

Query: 197 ----------------------------------CKEGMTDDALDILHSLGNLGCSPVLI 274
                                             CK   T  A+++L  +   GC P ++
Sbjct: 156 DHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIV 215

Query: 275 TYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLVLEAVEILREM 454
           TYN++++   +Q   E    +   ++  G+ P+ +TY +L+ S C      E  EIL  M
Sbjct: 216 TYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIM 275

Query: 455 NMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMR 634
           N  +   T   Y ++I GLCK   +D  I F + M+S +  P    Y TL+  +   GM 
Sbjct: 276 NTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMV 335

Query: 635 EEAIMLQKKL 664
           +EA+ L   L
Sbjct: 336 DEALHLLHSL 345



 Score =  111 bits (277), Expect = 3e-22
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 37/254 (14%)
 Frame = +2

Query: 50  PPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALD 229
           P   ITY +LI  +CKH    +A++ L+ M   G  PDI+TYN+L+   CK+G  +D   
Sbjct: 176 PAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSLVNYTCKQGKYEDTAL 235

Query: 230 ILHSLGNLGCSPVLITYNT-----------------------------------VIDGLT 304
           I+++L + G  P  +TYNT                                   +I+GL 
Sbjct: 236 IIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLC 295

Query: 305 RQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTG 484
           +   +++A++ + +M+     PD ITY +L+ + C+E +V EA+ +L  +N  + R + G
Sbjct: 296 KYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHLLHSLN--DTRCSPG 353

Query: 485 M--YTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQK 658
           +  Y +VI+GL K   ++  +E    MI     P +  + TL  G+    + E+A+++ K
Sbjct: 354 LITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALVILK 413

Query: 659 KLIERKVLKEESMF 700
           ++ +R    + S F
Sbjct: 414 EMNKRNQRIKNSAF 427



 Score = 69.7 bits (169), Expect = 9e-10
 Identities = 54/201 (26%), Positives = 87/201 (43%)
 Frame = +2

Query: 65  TYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDILHSL 244
           T N ++  LC  G L  A   +D M  R   P   +   L+  L K   T+ A  +L  +
Sbjct: 41  TNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLESTERATRVLKIM 100

Query: 245 GNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLV 424
              G  P +ITYN ++ GL ++  ++ A+ L  EM   G  PD ITY +++         
Sbjct: 101 VMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTILRCMFDHGGF 160

Query: 425 LEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATL 604
            +A+   ++   +        YTV+IE +CK+      +E LE M      P    Y +L
Sbjct: 161 DQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCYPDIVTYNSL 220

Query: 605 VKGVAASGMREEAIMLQKKLI 667
           V      G  E+  ++   L+
Sbjct: 221 VNYTCKQGKYEDTALIIYNLL 241


>ref|XP_002325338.1| predicted protein [Populus trichocarpa] gi|222862213|gb|EEE99719.1|
           predicted protein [Populus trichocarpa]
          Length = 481

 Score =  280 bits (717), Expect = 2e-73
 Identities = 141/228 (61%), Positives = 175/228 (76%)
 Frame = +2

Query: 2   WDEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNT 181
           WDEVD IL+IM  TS PPT +TYNILINGLCK GL++RA+++  +MV    SPDIITYNT
Sbjct: 248 WDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNT 307

Query: 182 LLGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKG 361
           LL ALCKEGM D+AL +   L +  CSP LITYNTVIDGLTR+  M++A+ LY +MIEKG
Sbjct: 308 LLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKG 367

Query: 362 VSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGI 541
           ++PD IT+RSL+W FC  D V +AVEILREM  R++RI +  Y +VI GLC+N +VD+ I
Sbjct: 368 IAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAI 427

Query: 542 EFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLK 685
           + LEMMIS   KP E IY+TL+K VA +GM EEA  L +KLIERKVL+
Sbjct: 428 QVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLR 475



 Score =  119 bits (298), Expect = 1e-24
 Identities = 73/246 (29%), Positives = 114/246 (46%), Gaps = 35/246 (14%)
 Frame = +2

Query: 20  ILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALC 199
           +L  M+ +   P  ITYN+++ G CK   L  A+D L+ M   G  PD+ITYNT++ +L 
Sbjct: 79  VLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLF 138

Query: 200 KEGMTDDA-----------------------------------LDILHSLGNLGCSPVLI 274
             G  D A                                   L++L  +   GC P L+
Sbjct: 139 DNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLV 198

Query: 275 TYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLVLEAVEILREM 454
           TYN++++  +++   E A  +   ++  G+ P+ ITY SL+ S C   L  E  EIL  M
Sbjct: 199 TYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIM 258

Query: 455 NMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATLVKGVAASGMR 634
              ++  T   Y ++I GLCK   V+  I F   M+S +  P    Y TL+  +   GM 
Sbjct: 259 KKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMV 318

Query: 635 EEAIML 652
           +EA+ +
Sbjct: 319 DEALQV 324



 Score =  110 bits (276), Expect = 3e-22
 Identities = 61/207 (29%), Positives = 111/207 (53%)
 Frame = +2

Query: 53  PTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDI 232
           P  +TYN L+N   K G  + A   +  ++  G  P+ ITYN+LL +LC  G+ D+  +I
Sbjct: 195 PDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEI 254

Query: 233 LHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCR 412
           L  +      P ++TYN +I+GL +   +E+A++ + +M+ +  SPD ITY +L+ + C+
Sbjct: 255 LAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCK 314

Query: 413 EDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAI 592
           E +V EA+++   ++  N       Y  VI+GL +   +D  ++    MI     P    
Sbjct: 315 EGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGIT 374

Query: 593 YATLVKGVAASGMREEAIMLQKKLIER 673
           + +LV G       E+A+ + +++ +R
Sbjct: 375 HRSLVWGFCWIDQVEDAVEILREMGKR 401



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 3/214 (1%)
 Frame = +2

Query: 8   EVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLL 187
           E   ++ IM   +  P +     LI GL + G ++RA   L  MV  G  PD+ITYN ++
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMV 99

Query: 188 GALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVS 367
           G  CK      A+D+L  +   GC P +ITYNT+I  L      ++A+  ++  + +G  
Sbjct: 100 GGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCL 159

Query: 368 PDDITYR---SLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLG 538
           P  I Y     L+W  C     + A+E+L +M +         Y  ++    K  + +  
Sbjct: 160 PYLIPYTILIELVWKHCG---TVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDA 216

Query: 539 IEFLEMMISSSRKPSEAIYATLVKGVAASGMREE 640
              +  ++S   +P+   Y +L+  + + G+ +E
Sbjct: 217 ALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDE 250



 Score = 76.3 bits (186), Expect = 9e-12
 Identities = 55/196 (28%), Positives = 89/196 (45%)
 Frame = +2

Query: 65  TYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDILHSL 244
           T N +++ LCK G L  A   +D M      P+      L+  L + G  + A  +L ++
Sbjct: 24  TNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTM 83

Query: 245 GNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLV 424
              G  P +ITYN ++ G  +++ +  A+ L ++M   G  PD ITY ++I S       
Sbjct: 84  VMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKF 143

Query: 425 LEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATL 604
            +AVE  R    R        YT++IE + K+      +E LE M      P    Y +L
Sbjct: 144 DQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSL 203

Query: 605 VKGVAASGMREEAIML 652
           V   +  G  E+A ++
Sbjct: 204 VNFASKEGKYEDAALI 219


>ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like
            [Cucumis sativus] gi|449516715|ref|XP_004165392.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g08610-like [Cucumis sativus]
          Length = 594

 Score =  255 bits (651), Expect = 1e-65
 Identities = 122/230 (53%), Positives = 170/230 (73%)
 Frame = +2

Query: 2    WDEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNT 181
            WDEVD IL IM  +  PPT +T N+LINGLCK+GLLD A+++L++M      PDIITYNT
Sbjct: 363  WDEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNT 422

Query: 182  LLGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKG 361
            LLGALCKEGM D+A  +LH L +  CSP LI+YNTV+DGL+R+  M+KAMSLY +M+E G
Sbjct: 423  LLGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENG 482

Query: 362  VSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGI 541
            + PDD T+RS+IW FCR +  +EAVE L+ +    Y + +  Y +++  LC N +VDL I
Sbjct: 483  IIPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFYRILVHELCLNKKVDLAI 542

Query: 542  EFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEE 691
            + LEMM+SS  K +E IY+T++  +A++G++E+A  L++KLIE KVL ++
Sbjct: 543  QVLEMMLSSPCKSNETIYSTIINSIASAGLKEQADELRQKLIEWKVLGKQ 592



 Score =  119 bits (298), Expect = 1e-24
 Identities = 78/251 (31%), Positives = 116/251 (46%), Gaps = 35/251 (13%)
 Frame = +2

Query: 5   DEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTL 184
           D+   +L IM+ +   P  ITYN++I  LCK G L+ A++ L+ M   G  PD+ITYN +
Sbjct: 189 DKAVQVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAV 248

Query: 185 LGALCKEGMTDDA-----------------------------------LDILHSLGNLGC 259
           +  +   G  D A                                   L++L  + N GC
Sbjct: 249 IRHMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGC 308

Query: 260 SPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLVLEAVE 439
            P L+TYN++I+   +Q   E A  +   ++  G+ PD +TY +L+ S  R     E  E
Sbjct: 309 YPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDE 368

Query: 440 ILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATLVKGVA 619
           IL+ M++     T     V+I GLCKN  +D  I FL  M S +  P    Y TL+  + 
Sbjct: 369 ILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALC 428

Query: 620 ASGMREEAIML 652
             GM +EA  L
Sbjct: 429 KEGMVDEAFQL 439



 Score =  107 bits (268), Expect = 3e-21
 Identities = 61/216 (28%), Positives = 110/216 (50%)
 Frame = +2

Query: 47  SPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDAL 226
           +PP  ITY ILI  + KH     A++ L+ M   G  PD++TYN+L+   CK+G  +DA 
Sbjct: 273 TPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAA 332

Query: 227 DILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSF 406
            ++ +L   G  P  +TYNT++  L+R+   ++   + K M      P  +T   LI   
Sbjct: 333 LVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILKIMSISLQPPTVVTCNVLINGL 392

Query: 407 CREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSE 586
           C+  L+  A+  L +M   N       Y  ++  LCK   VD   + L ++  ++  P  
Sbjct: 393 CKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEAFQLLHLLTDTACSPGL 452

Query: 587 AIYATLVKGVAASGMREEAIMLQKKLIERKVLKEES 694
             Y T++ G++  G  ++A+ L  +++E  ++ +++
Sbjct: 453 ISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDT 488



 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 62/211 (29%), Positives = 99/211 (46%)
 Frame = +2

Query: 8   EVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLL 187
           E   ++ IM   +  P       +I G      +D+AV  L  MV  G  PDIITYN ++
Sbjct: 155 EASRVVDIMASRNQIPDFECCINMIRGFVNTDRMDKAVQVLKIMVMSGGVPDIITYNMVI 214

Query: 188 GALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVS 367
           G LCK+G  + A+++L+ +   GC P +ITYN VI  +      ++A+  +KE + KG  
Sbjct: 215 GCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFDQAVEFWKEQLRKGTP 274

Query: 368 PDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEF 547
           P  ITY  LI    +    + A+E+L EM           Y  +I   CK  + +     
Sbjct: 275 PYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGKFEDAALV 334

Query: 548 LEMMISSSRKPSEAIYATLVKGVAASGMREE 640
           ++ ++     P    Y TL+  ++  G  +E
Sbjct: 335 IDNLLFHGMVPDAVTYNTLLHSLSRRGHWDE 365



 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 3/217 (1%)
 Frame = +2

Query: 65  TYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDILHSL 244
           T N+++   C  G L  A   +D M  R   PD      ++         D A+ +L  +
Sbjct: 139 TNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIRGFVNTDRMDKAVQVLKIM 198

Query: 245 GNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLV 424
              G  P +ITYN VI  L +Q  +E A+ L  +M   G  PD ITY ++I         
Sbjct: 199 VMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVITYNAVIRHMFDNGCF 258

Query: 425 LEAVEILREMNMRN---YRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIY 595
            +AVE  +E   +    Y IT   YT++IE + K+      +E LE M +    P    Y
Sbjct: 259 DQAVEFWKEQLRKGTPPYLIT---YTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTY 315

Query: 596 ATLVKGVAASGMREEAIMLQKKLIERKVLKEESMFET 706
            +L+      G  E+A ++   L+   ++ +   + T
Sbjct: 316 NSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNT 352


>ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like
            [Glycine max]
          Length = 589

 Score =  254 bits (648), Expect = 2e-65
 Identities = 125/232 (53%), Positives = 159/232 (68%)
 Frame = +2

Query: 2    WDEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNT 181
            WDEVD IL IM  TSSPPT++TYNIL+NGLCK GLLDRA+ +   MV    SPDIITYNT
Sbjct: 356  WDEVDDILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNT 415

Query: 182  LLGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKG 361
            LL  LCKEG  D+ + +L+ L    CSP L+TYN VIDGL R   ME A  LY EM++KG
Sbjct: 416  LLSGLCKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKG 475

Query: 362  VSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGI 541
            + PD+IT+ SL W FCR D + EA E+L+EM+M+  RI    Y  VI GLC+  +VD+ I
Sbjct: 476  IIPDEITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAI 535

Query: 542  EFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEESM 697
            + L++M+     P E IY+ L+K VA  GM +EA  L + LI+ K+LK+E M
Sbjct: 536  QVLDLMVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIM 587



 Score =  119 bits (297), Expect = 1e-24
 Identities = 69/236 (29%), Positives = 113/236 (47%)
 Frame = +2

Query: 50  PPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALD 229
           PP  ITY +LI  +CK+    RA++ L+ M   G  PDI+TYN+L+    K+G  +D   
Sbjct: 267 PPYLITYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTAL 326

Query: 230 ILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFC 409
           ++ +L + G  P  +TYNT+I  L      ++   + K M E    P  +TY  L+   C
Sbjct: 327 VILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDDILKIMNETSSPPTHVTYNILLNGLC 386

Query: 410 REDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEA 589
           +  L+  A+     M   N       Y  ++ GLCK   +D GI+ L +++ +S  P   
Sbjct: 387 KSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLCKEGFIDEGIQLLNLLVGTSCSPGLV 446

Query: 590 IYATLVKGVAASGMREEAIMLQKKLIERKVLKEESMFETQVALK*IYFSMLCWPIC 757
            Y  ++ G+A  G  E A  L  +++++ ++ +E           I  S L W  C
Sbjct: 447 TYNIVIDGLARLGSMESAKELYDEMVDKGIIPDE-----------ITHSSLTWGFC 491



 Score =  117 bits (294), Expect = 3e-24
 Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 35/256 (13%)
 Frame = +2

Query: 5   DEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTL 184
           DE    L+ M+ +   P  ITYN++I GLCK+G L  A+D ++ M   G SPD ITYN++
Sbjct: 182 DEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSI 241

Query: 185 LGAL-----------------------------------CKEGMTDDALDILHSLGNLGC 259
           +  L                                   CK      AL++L  +   GC
Sbjct: 242 IRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEGC 301

Query: 260 SPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLVLEAVE 439
            P ++TYN++++  ++Q   E    +   ++  G+ P+ +TY +LI S        E  +
Sbjct: 302 YPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVDD 361

Query: 440 ILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAIYATLVKGVA 619
           IL+ MN  +   T   Y +++ GLCK+  +D  I F   M++ +  P    Y TL+ G+ 
Sbjct: 362 ILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGLC 421

Query: 620 ASGMREEAIMLQKKLI 667
             G  +E I L   L+
Sbjct: 422 KEGFIDEGIQLLNLLV 437



 Score =  103 bits (258), Expect = 4e-20
 Identities = 62/207 (29%), Positives = 102/207 (49%)
 Frame = +2

Query: 20  ILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALC 199
           ++ +M   S  P   +   LI G  + GL+D A   L++MV  G  PD ITYN ++G LC
Sbjct: 152 LIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNKMVMSGGVPDTITYNMVIGGLC 211

Query: 200 KEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDI 379
           K G    ALD++  +   GCSP  ITYN++I  L  + +  +A++ +++ + KG  P  I
Sbjct: 212 KNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGNFNQAVNFWRDQLRKGCPPYLI 271

Query: 380 TYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMM 559
           TY  LI   C+      A+E+L +M M         Y  ++    K  + +     +  +
Sbjct: 272 TYTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVTYNSLVNLTSKQGKYEDTALVILNL 331

Query: 560 ISSSRKPSEAIYATLVKGVAASGMREE 640
           +S   +P+   Y TL+  +   G  +E
Sbjct: 332 LSHGMQPNAVTYNTLIHSLINHGYWDE 358



 Score = 83.2 bits (204), Expect = 8e-14
 Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 3/220 (1%)
 Frame = +2

Query: 62  ITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDILHS 241
           +T N ++  LC  G L  A   +D M  +   P   +   L+    ++G+ D+A   L+ 
Sbjct: 131 MTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGLVDEACKTLNK 190

Query: 242 LGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDL 421
           +   G  P  ITYN VI GL +   +  A+ L ++M   G SPD ITY S+I     +  
Sbjct: 191 MVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNSIIRCLFDKGN 250

Query: 422 VLEAVEILREMNMRN---YRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAI 592
             +AV   R+   +    Y IT   YTV+IE +CK       +E LE M      P    
Sbjct: 251 FNQAVNFWRDQLRKGCPPYLIT---YTVLIELVCKYCGAARALEVLEDMAMEGCYPDIVT 307

Query: 593 YATLVKGVAASGMREEAIMLQKKLIERKVLKEESMFETQV 712
           Y +LV   +  G  E+  ++   L+   +      + T +
Sbjct: 308 YNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLI 347


>ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297338306|gb|EFH68723.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 555

 Score =  244 bits (624), Expect = 2e-62
 Identities = 124/229 (54%), Positives = 165/229 (72%)
 Frame = +2

Query: 2    WDEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNT 181
            WDEV+ IL+IM  TS  PT ITYNILINGLCK  LL RA+D+  +M+ +   PDI+TYNT
Sbjct: 326  WDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNT 385

Query: 182  LLGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKG 361
            LLGA+ KEGM DDA+++L  L +  C P LITYN+VIDGL R+  M+KA+ LY  M++ G
Sbjct: 386  LLGAMSKEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAG 445

Query: 362  VSPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGI 541
            +SPDDIT RSLI+ FCR +LV EA ++L+E + R   I    Y +VI+GLCK  ++++ I
Sbjct: 446  ISPDDITRRSLIYGFCRANLVEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAI 505

Query: 542  EFLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKE 688
            E +E+M++S  KP E IY  +VKGV   GM  EA+ LQKKL + K+L+E
Sbjct: 506  EVVEIMLTSGCKPDETIYTAIVKGVEEMGMGSEAVQLQKKLTQWKLLRE 554



 Score =  122 bits (305), Expect = 1e-25
 Identities = 69/234 (29%), Positives = 116/234 (49%)
 Frame = +2

Query: 5   DEVDVILSIMIGTSSPPTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTL 184
           D+  VIL IM+ +   P  ITYN++I  LCK G +  A+  L+ M   G  PD+ITYNT+
Sbjct: 152 DKAMVILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTV 211

Query: 185 LGALCKEGMTDDALDILHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGV 364
           +  +   G  + A+         GC P +ITY  +++ + R     +AM + ++M  +G 
Sbjct: 212 IRCMFDHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGC 271

Query: 365 SPDDITYRSLIWSFCREDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIE 544
            PD +TY SL+   CR   + E   +++ +      + T  Y  ++  LC N   D   E
Sbjct: 272 YPDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEE 331

Query: 545 FLEMMISSSRKPSEAIYATLVKGVAASGMREEAIMLQKKLIERKVLKEESMFET 706
            L +M  +S  P+   Y  L+ G+  + +   AI    +++E+K L +   + T
Sbjct: 332 ILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNT 385



 Score =  107 bits (266), Expect = 5e-21
 Identities = 57/207 (27%), Positives = 107/207 (51%)
 Frame = +2

Query: 53  PTNITYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDI 232
           P  +TYN L+N  C+ G L+     +  ++  G   + +TYNTLL +LC     D+  +I
Sbjct: 273 PDIVTYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEI 332

Query: 233 LHSLGNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCR 412
           L+ +      P +ITYN +I+GL + + + +A+  + +M+E+   PD +TY +L+ +  +
Sbjct: 333 LNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSK 392

Query: 413 EDLVLEAVEILREMNMRNYRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAI 592
           E +V +A+E+L  +   +       Y  VI+GL +   +   +E    M+ +   P +  
Sbjct: 393 EGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDIT 452

Query: 593 YATLVKGVAASGMREEAIMLQKKLIER 673
             +L+ G   + + EEA  + K+   R
Sbjct: 453 RRSLIYGFCRANLVEEASQVLKETSNR 479



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 4/205 (1%)
 Frame = +2

Query: 65  TYNILINGLCKHGLLDRAVDYLDRMVCRGYSPDIITYNTLLGALCKEGMTDDALDILHSL 244
           T N +++ LC +G L  A   ++ M      P   + + L+  L +    D A+ IL  +
Sbjct: 102 TNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVILRIM 161

Query: 245 GNLGCSPVLITYNTVIDGLTRQKDMEKAMSLYKEMIEKGVSPDDITYRSLIWSFCREDLV 424
              G  P  ITYN +I  L ++  +  A+ L ++M   G  PD ITY ++I         
Sbjct: 162 VMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMFDHGNA 221

Query: 425 LEAVEILREMNMRN----YRITTGMYTVVIEGLCKNNQVDLGIEFLEMMISSSRKPSEAI 592
            +A+   ++  +RN    Y IT   YTV++E +C+       ++ LE M      P    
Sbjct: 222 EQAIRFWKD-QLRNGCPPYMIT---YTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIVT 277

Query: 593 YATLVKGVAASGMREEAIMLQKKLI 667
           Y +LV      G  EE  ++ + ++
Sbjct: 278 YNSLVNYNCRRGNLEEVALVIQHIL 302