BLASTX nr result
ID: Coptis23_contig00032092
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00032092
(206 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192092.1| ABC transporter B family member 5 [Arabidopsis ... 100 2e-19
ref|XP_002872874.1| P-glycoprotein 5 [Arabidopsis lyrata subsp. ... 100 2e-19
ref|NP_192091.1| ABC transporter B family member 3 [Arabidopsis ... 99 4e-19
emb|CAA75922.1| P-glycoprotein-like protein [Arabidopsis thaliana] 99 4e-19
ref|XP_003550577.1| PREDICTED: ABC transporter B family member 1... 98 6e-19
>ref|NP_192092.1| ABC transporter B family member 5 [Arabidopsis thaliana]
gi|75337855|sp|Q9SYI3.1|AB5B_ARATH RecName: Full=ABC
transporter B family member 5; Short=ABC transporter
ABCB.5; Short=AtABCB5; AltName: Full=P-glycoprotein 5;
AltName: Full=Putative multidrug resistance protein 5
gi|4558552|gb|AAD22645.1|AC007138_9 putative
P-glycoprotein-like protein [Arabidopsis thaliana]
gi|7268567|emb|CAB80676.1| putative P-glycoprotein-like
protein [Arabidopsis thaliana]
gi|332656682|gb|AEE82082.1| ABC transporter B family
member 5 [Arabidopsis thaliana]
Length = 1230
Score = 100 bits (248), Expect = 2e-19
Identities = 48/68 (70%), Positives = 60/68 (88%)
Frame = -3
Query: 204 RVTTGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVI 25
R +GM+LE+VKGDIE +SFTYQTRP+V++F+DL L++++GQ VALVGESG GKSTVI
Sbjct: 971 RDESGMVLENVKGDIELCHISFTYQTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVI 1030
Query: 24 SLLQRFYD 1
SLLQRFYD
Sbjct: 1031 SLLQRFYD 1038
Score = 75.5 bits (184), Expect = 4e-12
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = -3
Query: 192 GMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISLLQ 13
G +LE ++G+IE R V F+Y RP ++F L + SG ALVGESG GKSTVISL++
Sbjct: 343 GKVLEDIRGEIELRDVCFSYPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIE 402
Query: 12 RFYD 1
RFYD
Sbjct: 403 RFYD 406
>ref|XP_002872874.1| P-glycoprotein 5 [Arabidopsis lyrata subsp. lyrata]
gi|297318711|gb|EFH49133.1| P-glycoprotein 5 [Arabidopsis
lyrata subsp. lyrata]
Length = 1230
Score = 99.8 bits (247), Expect = 2e-19
Identities = 48/68 (70%), Positives = 59/68 (86%)
Frame = -3
Query: 204 RVTTGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVI 25
R +GM+LE+VKGDIE +SFTYQTRP+V++F+DL L +++GQ VALVGESG GKSTVI
Sbjct: 971 RDESGMVLENVKGDIELCHISFTYQTRPDVQVFRDLCLTIRAGQTVALVGESGSGKSTVI 1030
Query: 24 SLLQRFYD 1
SLLQRFYD
Sbjct: 1031 SLLQRFYD 1038
Score = 75.5 bits (184), Expect = 4e-12
Identities = 37/64 (57%), Positives = 45/64 (70%)
Frame = -3
Query: 192 GMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISLLQ 13
G +LE ++G IE R V F+Y RP +IF L + SG VALVGESG GKSTVISL++
Sbjct: 343 GKVLEDIRGVIELRDVCFSYPARPKEEIFGGFSLLIPSGATVALVGESGSGKSTVISLIE 402
Query: 12 RFYD 1
RFYD
Sbjct: 403 RFYD 406
>ref|NP_192091.1| ABC transporter B family member 3 [Arabidopsis thaliana]
gi|75337854|sp|Q9SYI2.1|AB3B_ARATH RecName: Full=ABC
transporter B family member 3; Short=ABC transporter
ABCB.3; Short=AtABCB3; AltName: Full=P-glycoprotein 3;
AltName: Full=Putative multidrug resistance protein 3
gi|4558551|gb|AAD22644.1|AC007138_8 P-glycoprotein-like
protein [Arabidopsis thaliana] gi|7268566|emb|CAB80675.1|
P-glycoprotein-like protein pgp3 [Arabidopsis thaliana]
gi|332656681|gb|AEE82081.1| ABC transporter B family
member 3 [Arabidopsis thaliana]
Length = 1229
Score = 99.0 bits (245), Expect = 4e-19
Identities = 48/68 (70%), Positives = 59/68 (86%)
Frame = -3
Query: 204 RVTTGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVI 25
R +G++LE+VKGDIE +SFTYQTRP+V+IF+DL A+++GQ VALVGESG GKSTVI
Sbjct: 970 RDESGLVLENVKGDIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVI 1029
Query: 24 SLLQRFYD 1
SLLQRFYD
Sbjct: 1030 SLLQRFYD 1037
Score = 73.2 bits (178), Expect = 2e-11
Identities = 34/64 (53%), Positives = 45/64 (70%)
Frame = -3
Query: 192 GMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISLLQ 13
G +LE ++G+IE R V F+Y RP ++F L + SG ALVGESG GKS+VISL++
Sbjct: 338 GKVLEDIRGEIELRDVCFSYPARPMEEVFGGFSLLIPSGATAALVGESGSGKSSVISLIE 397
Query: 12 RFYD 1
RFYD
Sbjct: 398 RFYD 401
>emb|CAA75922.1| P-glycoprotein-like protein [Arabidopsis thaliana]
Length = 1229
Score = 99.0 bits (245), Expect = 4e-19
Identities = 48/68 (70%), Positives = 59/68 (86%)
Frame = -3
Query: 204 RVTTGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVI 25
R +G++LE+VKGDIE +SFTYQTRP+V+IF+DL A+++GQ VALVGESG GKSTVI
Sbjct: 970 RDESGLVLENVKGDIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVI 1029
Query: 24 SLLQRFYD 1
SLLQRFYD
Sbjct: 1030 SLLQRFYD 1037
Score = 73.2 bits (178), Expect = 2e-11
Identities = 34/64 (53%), Positives = 45/64 (70%)
Frame = -3
Query: 192 GMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISLLQ 13
G +LE ++G+IE R V F+Y RP ++F L + SG ALVGESG GKS+VISL++
Sbjct: 338 GKVLEDIRGEIELRDVCFSYPARPMEEVFGGFSLLIPSGATAALVGESGSGKSSVISLIE 397
Query: 12 RFYD 1
RFYD
Sbjct: 398 RFYD 401
>ref|XP_003550577.1| PREDICTED: ABC transporter B family member 11-like [Glycine max]
Length = 1275
Score = 98.2 bits (243), Expect = 6e-19
Identities = 47/65 (72%), Positives = 55/65 (84%)
Frame = -3
Query: 195 TGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISLL 16
+GM LE VKG+IE R VSF Y TRP+V+IF+DL L + +G+ VALVGESGCGKSTVISLL
Sbjct: 1021 SGMTLEEVKGEIELRHVSFKYPTRPDVQIFRDLSLTIHTGKTVALVGESGCGKSTVISLL 1080
Query: 15 QRFYD 1
QRFYD
Sbjct: 1081 QRFYD 1085
Score = 77.8 bits (190), Expect = 9e-13
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = -3
Query: 198 TTGMILESVKGDIEFRRVSFTYQTRPNVKIFQDLDLAVQSGQMVALVGESGCGKSTVISL 19
TTG+ + ++GDIE + V F+Y TRP+ +F L++ SG ALVG+SG GKSTV+SL
Sbjct: 360 TTGLKINDIRGDIELKEVCFSYPTRPDELVFNGFSLSIPSGTTAALVGQSGSGKSTVVSL 419
Query: 18 LQRFYD 1
++RFYD
Sbjct: 420 IERFYD 425