BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032088
         (958 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containi...   165   1e-38
ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containi...   159   9e-37
ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|2...   140   6e-31
ref|XP_002527661.1| pentatricopeptide repeat-containing protein,...   132   2e-28
ref|XP_003612846.1| Pentatricopeptide repeat-containing protein ...   124   3e-26

>ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
           gi|297742067|emb|CBI33854.3| unnamed protein product
           [Vitis vinifera]
          Length = 767

 Score =  165 bits (418), Expect = 1e-38
 Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 17/222 (7%)
 Frame = +1

Query: 343 FTAYHTASSSSVYLSEEEQFEPTPYVQNCSVKE-PIEEFKLRKGNKPT------------ 483
           F  Y TASS+ + L ++  F+ +P V    + E  I++ +LR G K              
Sbjct: 27  FRVYRTASSA-LLLDDDHVFDTSPGVPVDDLVEINIQKCQLRVGRKRNEIRVMKRRSRIH 85

Query: 484 ----LFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYC 651
               L P++V+VF +L+  V R + FS  + KYGF  SI +F  +V++ + AGMH +VY 
Sbjct: 86  RKHVLSPVVVKVFKSLNWEVARHIKFSTTMKKYGFSRSIDAFRTVVNVLALAGMHMEVYA 145

Query: 652 LLMEIVLYYERVGYDTFALFPTLLELSNGVERSLTVFDVLMKVYASSLMLENAVDVFVQV 831
           LL +IV YY +V  D F LFP LLE      RS+ VFD+L+KV+A++ MLENAVDVF+Q 
Sbjct: 146 LLRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQA 205

Query: 832 KGIGLQPGLLSCNFMLKCLVQGNKVEYIMGIFDVMKNSGPQP 957
           K  GL+    SCNF+LKCL + N+ E++  +F+ MK++GP P
Sbjct: 206 KKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPP 247


>ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 827

 Score =  159 bits (402), Expect = 9e-37
 Identities = 90/219 (41%), Positives = 130/219 (59%)
 Frame = +1

Query: 301 GTFRKLVLVPKYLSFTAYHTASSSSVYLSEEEQFEPTPYVQNCSVKEPIEEFKLRKGNKP 480
           G  R+ V   +   F  Y  +S+SS  + E+  F+ +P   +  +  P       +    
Sbjct: 103 GLIRRQVHFQRQCLFRFY--SSASSALMLEDHVFDESPK-SHFVINRPAPHVPATRSE-- 157

Query: 481 TLFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYCLLM 660
            LFPL+ RVF +L   V R+  F   V+ +GF HSIS F I+VH F+ AGM  +V+ LL 
Sbjct: 158 -LFPLVSRVFKSLSWSVARKKKFGNWVECHGFSHSISCFRIIVHAFALAGMRLEVWALLR 216

Query: 661 EIVLYYERVGYDTFALFPTLLELSNGVERSLTVFDVLMKVYASSLMLENAVDVFVQVKGI 840
           +IV +     YDTF LF   L+    VERS  VFDVL+ V+AS+ MLENA+DVF   K +
Sbjct: 217 DIVGFCNEAKYDTFELFSAFLDSPQHVERSGVVFDVLISVFASNSMLENALDVFSNAKHV 276

Query: 841 GLQPGLLSCNFMLKCLVQGNKVEYIMGIFDVMKNSGPQP 957
           GL+P + +CNF+LKCLV+ N+VE++  +F+ +K+ GP P
Sbjct: 277 GLEPDIRTCNFLLKCLVEANRVEFVRRVFEELKDRGPSP 315


>ref|XP_002326536.1| predicted protein [Populus trichocarpa] gi|222833858|gb|EEE72335.1|
           predicted protein [Populus trichocarpa]
          Length = 697

 Score =  140 bits (352), Expect = 6e-31
 Identities = 72/171 (42%), Positives = 109/171 (63%)
 Frame = +1

Query: 445 IEEFKLRKGNKPTLFPLLVRVFHTLDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSS 624
           +   K +   +  L  L+V +  TL+  V R+V FS +V+ YGF +SI++F  +VH+F+ 
Sbjct: 13  VPRIKFKNPKRCELSRLVVELLKTLNWEVARQVKFSKSVNVYGFFYSINAFRTIVHVFAL 72

Query: 625 AGMHNQVYCLLMEIVLYYERVGYDTFALFPTLLELSNGVERSLTVFDVLMKVYASSLMLE 804
           AG+  +   LL +IV YY+    +   LF T L+    V RS TV  +L+KV+AS+ ML 
Sbjct: 73  AGLQREAQYLLTDIVFYYKEENLNVSGLFSTFLDSPECVGRSATVLSLLIKVFASNKMLA 132

Query: 805 NAVDVFVQVKGIGLQPGLLSCNFMLKCLVQGNKVEYIMGIFDVMKNSGPQP 957
           +A DVF+Q K IG++  + SCNF+LKCL +G+K+E +  +FD +KNSGP P
Sbjct: 133 DAKDVFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSP 183


>ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532966|gb|EEF34732.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 766

 Score =  132 bits (331), Expect = 2e-28
 Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
 Frame = +1

Query: 364 SSSSVYLSEEEQFEPTPYVQNCSVKEPIEEFKLRKGN----KPTLFPLLVRVFHTLDIWV 531
           S  S  L E++ ++  P   +   +      K RK N    K  LFP ++ VF TL+  +
Sbjct: 49  SGVSALLLEDQVYDYIPVTDSNRFE------KARKPNSCPRKRGLFPFVLTVFKTLNWKL 102

Query: 532 TRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYCLLMEIVLYYERVGYDTFALF 711
                F  AV  +GF HSI +F I++H+ +SAG+  +V   L +I+ YY+ V  D   LF
Sbjct: 103 ATHTNFFKAVSFHGFSHSIYAFKIIIHVLASAGLQMEVQIFLRDIISYYKEVNLDVSELF 162

Query: 712 PTLLELSNGVER--SLTVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFMLKC 885
            TLL+         S+ V +VL+KV+A + ML +A DVFVQ +  GL+  +LSCNF+L C
Sbjct: 163 STLLDSPQDAHMGGSIIVANVLIKVFAENNMLVDAADVFVQARRFGLELNILSCNFLLNC 222

Query: 886 LVQGNKVEYIMGIFDVMKNSGPQP 957
             + N+ E+I  +F+ +K+SGP P
Sbjct: 223 FAEANQTEFIRSLFEELKDSGPSP 246


>ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355514181|gb|AES95804.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 892

 Score =  124 bits (312), Expect = 3e-26
 Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 1/207 (0%)
 Frame = +1

Query: 340 SFTAYHTASSSSVYLSEEEQFEPTPYVQNCSVKEPIEEFKLRKGNKPTLFPLLV-RVFHT 516
           +F  +++ SSS++ L  E +              PI    L K    T  P LV +VF T
Sbjct: 17  TFFRFYSPSSSALMLQPETE-------------TPIFNTPLPKTT--TKLPRLVSKVFKT 61

Query: 517 LDIWVTRRVTFSLAVDKYGFPHSISSFGIMVHMFSSAGMHNQVYCLLMEIVLYYERVGYD 696
           L+  V R + F   V  +GF +SI+SF I++H ++ AGM  +V+ L+ +IV +Y+    D
Sbjct: 62  LNWGVAREIKFKGCVQIHGFENSINSFSIIIHTYALAGMSWEVFILIRDIVTFYKEENRD 121

Query: 697 TFALFPTLLELSNGVERSLTVFDVLMKVYASSLMLENAVDVFVQVKGIGLQPGLLSCNFM 876
              L   LL+    VE+S  VFD+L+KV+AS+ MLE+A  VFV+ K  G++  ++SCNF+
Sbjct: 122 AGELVSLLLD----VEKSNVVFDMLIKVFASNSMLEHANYVFVRAKDDGIELNIMSCNFL 177

Query: 877 LKCLVQGNKVEYIMGIFDVMKNSGPQP 957
           LKCLV+ N+V+ +  +F+V+   GP+P
Sbjct: 178 LKCLVEDNRVDGVRLLFEVLIKFGPRP 204