BLASTX nr result

ID: Coptis23_contig00032012 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00032012
         (490 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69754.1| hypothetical protein VITISV_024938 [Vitis vinifera]    45   4e-06
emb|CAN66945.1| hypothetical protein VITISV_020092 [Vitis vinifera]    45   4e-06
emb|CAN76505.1| hypothetical protein VITISV_016883 [Vitis vinifera]    44   6e-06

>emb|CAN69754.1| hypothetical protein VITISV_024938 [Vitis vinifera]
          Length = 971

 Score = 44.7 bits (104), Expect(2) = 4e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 297 NTALLSKWVWRYGEEKEKLWRKVIVGKCGVGE 202
           N ALL KW+WRY  E+E LW++VI+ K G  E
Sbjct: 695 NKALLGKWIWRYACERENLWKQVILAKYGQEE 726



 Score = 30.8 bits (68), Expect(2) = 4e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 224 WGSVEWGRVWRHKVPSGPFGITLWNTLLK 138
           +G  E+G  WR K P+G FG+  W  ++K
Sbjct: 722 YGQEEYG--WRSKKPNGAFGVGAWKEIMK 748


>emb|CAN66945.1| hypothetical protein VITISV_020092 [Vitis vinifera]
          Length = 894

 Score = 44.7 bits (104), Expect(2) = 4e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -2

Query: 297 NTALLSKWVWRYGEEKEKLWRKVIVGKCGVGE 202
           N ALL KW+WRY  E+E LW++VI+ K G  E
Sbjct: 783 NKALLGKWIWRYACERENLWKQVILAKYGQEE 814



 Score = 30.8 bits (68), Expect(2) = 4e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 224 WGSVEWGRVWRHKVPSGPFGITLWNTLLK 138
           +G  E+G  WR K P+G FG+  W  ++K
Sbjct: 810 YGQEEYG--WRSKKPNGAFGVGAWKEIMK 836


>emb|CAN76505.1| hypothetical protein VITISV_016883 [Vitis vinifera]
          Length = 882

 Score = 43.9 bits (102), Expect(2) = 6e-06
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = -2

Query: 297 NTALLSKWVWRYGEEKEKLWRKVIVGKCGVGE 202
           N ALL KW+WRY  E+E LW++VI  K G  E
Sbjct: 403 NKALLGKWIWRYACERENLWKQVIXAKYGQEE 434



 Score = 30.8 bits (68), Expect(2) = 6e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 224 WGSVEWGRVWRHKVPSGPFGITLWNTLLK 138
           +G  E+G  WR K P+G FG+  W  ++K
Sbjct: 430 YGQEEYG--WRSKKPNGAFGVGXWKEIMK 456


Top