BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031764
         (900 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   161   6e-62
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   149   2e-59
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   150   4e-59
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   150   4e-59
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...   152   4e-59

>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  161 bits (407), Expect(2) = 6e-62
 Identities = 79/165 (47%), Positives = 104/165 (63%)
 Frame = +1

Query: 97  FDEIKPLVTHEDNEILTRVISMEEIHAAVFDMGPYKSPGPDGFTPLFFQKC*HFVKDDLY 276
           F+ + P+V+  DN  LT  +S EEI  AVFD+ P KSPGPDGF P FFQK    +   + 
Sbjct: 425 FNLLSPIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKSVC 484

Query: 277 RMVSQFFQTGHFLRQLNHTHIT*VPKSPHPTSIKDYRPISLCNTAYRIISKILVNRLKPL 456
           R V  FF +G+ L+++NHT +  +PK   P +   +RPISLC+T Y++ISKI+ NRLK  
Sbjct: 485 RAVQAFFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLKIT 544

Query: 457 LDKIISPHQNAFVKRRQILDNSIMVHEILHYFKKKRGISGCCAAK 591
           L KII P Q AF+  R I DN ++ HE+ H FK K G  G  A K
Sbjct: 545 LGKIIHPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIK 589



 Score =  103 bits (257), Expect(2) = 6e-62
 Identities = 46/74 (62%), Positives = 56/74 (75%)
 Frame = +3

Query: 597 KLDMNKAFDRIEWNFVITSLRSLGFCQTWCDWIYSCISSTSFSVKVNGSPHGFFKPSRGL 776
           KLDM KA+DR+EW ++ T++  +GF   W +WI SCISS SFSV VNG P   F PSRG+
Sbjct: 589 KLDMEKAYDRLEWKYIYTTMDKMGFSPIWIEWIRSCISSASFSVLVNGIPGERFFPSRGI 648

Query: 777 RQGDPLSPSLFIIC 818
           RQGDPLSP LFI+C
Sbjct: 649 RQGDPLSPYLFILC 662


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  149 bits (376), Expect(2) = 2e-59
 Identities = 82/178 (46%), Positives = 113/178 (63%), Gaps = 4/178 (2%)
 Frame = +1

Query: 25  DIGKHIVSFFQDLFTSTTTVVPQIFDE----IKPLVTHEDNEILTRVISMEEIHAAVFDM 192
           DI    VS+FQ+LFT   T  PQ+FDE    ++ L+T   N++LT   +  E+ AA+F +
Sbjct: 168 DIQNIAVSYFQNLFT---TANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMI 224

Query: 193 GPYKSPGPDGFTPLFFQKC*HFVKDDLYRMVSQFFQTGHFLRQLNHTHIT*VPKSPHPTS 372
            P K+PGPDG T LFFQK    +K DL  +V+ F Q G F ++LN T+I  +PK+  PT 
Sbjct: 225 HPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTR 284

Query: 373 IKDYRPISLCNTAYRIISKILVNRLKPLLDKIISPHQNAFVKRRQILDNSIMVHEILH 546
           + + RPISLCN  Y++ISKIL  RLK +L  +IS  Q+AFV  R I DN ++  E+ H
Sbjct: 285 MTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFH 342



 Score =  107 bits (267), Expect(2) = 2e-59
 Identities = 47/101 (46%), Positives = 61/101 (60%)
 Frame = +3

Query: 597 KLDMNKAFDRIEWNFVITSLRSLGFCQTWCDWIYSCISSTSFSVKVNGSPHGFFKPSRGL 776
           K DM+KA+D++EWNF+   LR +GFC+ W  WI  CI++  + V +NG P G   P RGL
Sbjct: 358 KTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGL 417

Query: 777 RQGDPLSPSLFIICTXXXXXXXXXXXXKKFIHGVKVDRKCP 899
           RQGDPLSP LFI+CT            +  I G+KV    P
Sbjct: 418 RQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSP 458


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  150 bits (378), Expect(2) = 4e-59
 Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1    GGMPMGQSDIGKHIVSFFQDLF-TSTTTVVPQIFDEIKPLVTHEDNEILTRVISMEEIHA 177
            G M  G  +IG H   FF ++F T+   V P  F + K  VT+  N  LT+  S  EI+ 
Sbjct: 758  GRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD 817

Query: 178  AVFDMGPYKSPGPDGFTPLFFQKC*HFVKDDLYRMVSQFFQTGHFLRQLNHTHIT*VPKS 357
            A+  +G  K+PGPDG T  F++ C   V  D+   V +FF+T      +NHT+I  +PK 
Sbjct: 818  AICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKI 877

Query: 358  PHPTSIKDYRPISLCNTAYRIISKILVNRLKPLLDKIISPHQNAFVKRRQILDNSIMVHE 537
             +PT++ DYRPI+LCN  Y++ISK LVNRLK  L+ I+S  Q AF+  R I DN ++ HE
Sbjct: 878  TNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHE 937

Query: 538  ILHYFKKKRGIS 573
            ++H  K ++ +S
Sbjct: 938  VMHSLKVRKRVS 949



 Score =  105 bits (261), Expect(2) = 4e-59
 Identities = 44/101 (43%), Positives = 63/101 (62%)
 Frame = +3

Query: 597  KLDMNKAFDRIEWNFVITSLRSLGFCQTWCDWIYSCISSTSFSVKVNGSPHGFFKPSRGL 776
            K D++KA+DR+EW+F+ T++R  GFC  W  WI + + S  +SV +NGSPHG+  P+RG+
Sbjct: 956  KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 1015

Query: 777  RQGDPLSPSLFIICTXXXXXXXXXXXXKKFIHGVKVDRKCP 899
            RQGDPLSP LFI+C                + GV++    P
Sbjct: 1016 RQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAP 1056


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  150 bits (378), Expect(2) = 4e-59
 Identities = 80/192 (41%), Positives = 115/192 (59%), Gaps = 1/192 (0%)
 Frame = +1

Query: 1    GGMPMGQSDIGKHIVSFFQDLF-TSTTTVVPQIFDEIKPLVTHEDNEILTRVISMEEIHA 177
            G M  G  +IG H   FF ++F T+   V P  F + K  VT+  N  LT+  S  EI+ 
Sbjct: 532  GRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD 591

Query: 178  AVFDMGPYKSPGPDGFTPLFFQKC*HFVKDDLYRMVSQFFQTGHFLRQLNHTHIT*VPKS 357
            A+  +G  K+PGPDG T  F++ C   V  D+   V +FF+T      +NHT+I  +PK 
Sbjct: 592  AICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKI 651

Query: 358  PHPTSIKDYRPISLCNTAYRIISKILVNRLKPLLDKIISPHQNAFVKRRQILDNSIMVHE 537
             +PT++ DYRPI+LCN  Y++ISK LVNRLK  L+ I+S  Q AF+  R I DN ++ HE
Sbjct: 652  TNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHE 711

Query: 538  ILHYFKKKRGIS 573
            ++H  K ++ +S
Sbjct: 712  VMHSLKVRKRVS 723



 Score =  105 bits (261), Expect(2) = 4e-59
 Identities = 44/101 (43%), Positives = 63/101 (62%)
 Frame = +3

Query: 597  KLDMNKAFDRIEWNFVITSLRSLGFCQTWCDWIYSCISSTSFSVKVNGSPHGFFKPSRGL 776
            K D++KA+DR+EW+F+ T++R  GFC  W  WI + + S  +SV +NGSPHG+  P+RG+
Sbjct: 730  KTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGI 789

Query: 777  RQGDPLSPSLFIICTXXXXXXXXXXXXKKFIHGVKVDRKCP 899
            RQGDPLSP LFI+C                + GV++    P
Sbjct: 790  RQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIGNGAP 830


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score =  152 bits (384), Expect(2) = 4e-59
 Identities = 76/191 (39%), Positives = 117/191 (61%), Gaps = 1/191 (0%)
 Frame = +1

Query: 19  QSDIGKHIVSFFQDLFTSTTTVVPQIFDE-IKPLVTHEDNEILTRVISMEEIHAAVFDMG 195
           +  I + I  +FQ +FTS +     + DE I+P+V+  DN+ LTR+ + EE+  AVF + 
Sbjct: 277 EHQISQIISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSIN 336

Query: 196 PYKSPGPDGFTPLFFQKC*HFVKDDLYRMVSQFFQTGHFLRQLNHTHIT*VPKSPHPTSI 375
             K+PGPDGFT  F+    H +  D+ R +  FF + +F R++N THI  +PK   P  +
Sbjct: 337 ASKAPGPDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKV 396

Query: 376 KDYRPISLCNTAYRIISKILVNRLKPLLDKIISPHQNAFVKRRQILDNSIMVHEILHYFK 555
            DYRPI+LCN  Y+I++KI+  R++ +L K+IS +Q+AFV  R I DN ++ HE+LH+ +
Sbjct: 397 ADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVISDNVLITHEVLHFLR 456

Query: 556 KKRGISGCCAA 588
                  C  A
Sbjct: 457 TSSAKKHCSMA 467



 Score =  102 bits (255), Expect(2) = 4e-59
 Identities = 46/106 (43%), Positives = 63/106 (59%)
 Frame = +3

Query: 582 CCQTAKLDMNKAFDRIEWNFVITSLRSLGFCQTWCDWIYSCISSTSFSVKVNGSPHGFFK 761
           C    K DM+KA+DR+EW+F+   L+  GF   W DW+  C++S S+S  +NG+P G   
Sbjct: 464 CSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVV 523

Query: 762 PSRGLRQGDPLSPSLFIICTXXXXXXXXXXXXKKFIHGVKVDRKCP 899
           P+RGLRQGDPLSP LFI+CT             + + GV+V    P
Sbjct: 524 PTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVSINGP 569