BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031741
         (639 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containi...   238   5e-61
ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|2...   228   7e-58
ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containi...   228   7e-58
ref|XP_002892331.1| pentatricopeptide repeat-containing protein ...   219   4e-55
ref|NP_563765.1| pentatricopeptide repeat-containing protein [Ar...   217   1e-54

>ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06270-like [Glycine max]
          Length = 342

 Score =  238 bits (608), Expect = 5e-61
 Identities = 124/212 (58%), Positives = 159/212 (75%), Gaps = 1/212 (0%)
 Frame = -3

Query: 634 QPLKTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPV 455
           Q ++ QI+D++LQSLIPIRPRS   LTYSYLLS+TL++  PFPL  A+LQRTLRSG  PV
Sbjct: 74  QNIRVQIVDEMLQSLIPIRPRSKAQLTYSYLLSYTLQSSHPFPLALAVLQRTLRSGCVPV 133

Query: 454 KQTHLSLSSTWITYR-KHDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVL 278
            QTH+ LSS W+       SV  IL  M++IGY PD  TCNYL+ SLCAVDQ +E+V+VL
Sbjct: 134 PQTHVLLSSAWLDQHCLSHSVANILLQMQSIGYHPDCGTCNYLLSSLCAVDQLEEAVKVL 193

Query: 277 KCMGHVGCEPNSESYGLVIGSLCGARKTNDAVELVKKMVWVENRVMLRQGTVVKLMAAMK 98
           + MG  GC P+S SYG VIG++C  RKT  A++L+K+MV V+  +   QGT+VKL+AA++
Sbjct: 194 RGMGGAGCIPDSSSYGAVIGAMCRVRKTAKALDLMKQMV-VQYGLTPGQGTLVKLLAALR 252

Query: 97  ANGEIKKAVEMVELLEKVGLRVGFEGYEVLVE 2
           AN EI KAVEM+E LEK G  VGFE YE+++E
Sbjct: 253 ANREIWKAVEMIEFLEKEGNSVGFESYELVIE 284


>ref|XP_002330712.1| predicted protein [Populus trichocarpa] gi|222872316|gb|EEF09447.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score =  228 bits (581), Expect = 7e-58
 Identities = 120/210 (57%), Positives = 157/210 (74%), Gaps = 1/210 (0%)
 Frame = -3

Query: 628 LKTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQ 449
           L+TQ+ID+I+QSLIPIRPR    + YS LLS+TL+N + F L+ AI+Q TLRSG  PV Q
Sbjct: 75  LRTQVIDEIIQSLIPIRPRFRNFIVYSSLLSYTLQNSNLFSLSLAIIQCTLRSGCLPVPQ 134

Query: 448 THLSLSSTWITYRKH-DSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKC 272
           TH+SLSS W+  R+   SV  IL  M++IGY PD   CNY+V SLC VDQ  E+V+VLK 
Sbjct: 135 THVSLSSAWLDRRREGQSVGDILMEMKSIGYNPDCGLCNYIVLSLCNVDQLIEAVKVLKG 194

Query: 271 MGHVGCEPNSESYGLVIGSLCGARKTNDAVELVKKMVWVENRVMLRQGTVVKLMAAMKAN 92
           M  VGC P+ ESYG+VIG++C  RK +DA+E++K+MV V  R+  RQG VVK++AA++AN
Sbjct: 195 MKQVGCFPDWESYGIVIGAMCRVRKCDDAIEMMKEMV-VRMRLCPRQGVVVKVLAALRAN 253

Query: 91  GEIKKAVEMVELLEKVGLRVGFEGYEVLVE 2
            E++KA EM+E LEK G  VGFE YE++VE
Sbjct: 254 REMRKAGEMIEFLEKEGYGVGFESYELVVE 283


>ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
           [Vitis vinifera] gi|302143379|emb|CBI21940.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score =  228 bits (581), Expect = 7e-58
 Identities = 119/213 (55%), Positives = 153/213 (71%), Gaps = 1/213 (0%)
 Frame = -3

Query: 637 TQPLKTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTP 458
           +Q L+TQ++D+ILQS IP+RPRS P + Y+ LLS TL++ +P PL  AILQRTLRSG  P
Sbjct: 74  SQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLALAILQRTLRSGCIP 133

Query: 457 VKQTHLSLSSTWITYRKHD-SVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRV 281
           V QTHL LSS W++ R+   SV  ILS M++IGY PD  TCNYL+ SLCA+DQ  E+V V
Sbjct: 134 VPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILSLCAIDQLVEAVIV 193

Query: 280 LKCMGHVGCEPNSESYGLVIGSLCGARKTNDAVELVKKMVWVENRVMLRQGTVVKLMAAM 101
           LK MG VGC P+ E YG VIG++C  R+T DA EL+K+MV  +  +  RQGTV+ L+AA+
Sbjct: 194 LKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMV-AKIGLTPRQGTVLNLVAAL 252

Query: 100 KANGEIKKAVEMVELLEKVGLRVGFEGYEVLVE 2
           +A  EI KAVEM+E LE      GF  YE ++E
Sbjct: 253 RAKKEIWKAVEMIEFLEGEDFNAGFASYESVLE 285


>ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338173|gb|EFH68590.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 343

 Score =  219 bits (557), Expect = 4e-55
 Identities = 113/209 (54%), Positives = 151/209 (72%), Gaps = 1/209 (0%)
 Frame = -3

Query: 625 KTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQT 446
           + ++ID+ILQS +P+RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG  P  QT
Sbjct: 78  RIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQT 137

Query: 445 HLSLSSTWITYRK-HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCM 269
            L LS  W+  R+   SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ M
Sbjct: 138 QLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEM 197

Query: 268 GHVGCEPNSESYGLVIGSLCGARKTNDAVELVKKMVWVENRVMLRQGTVVKLMAAMKANG 89
           G  GC P+ ESYG VI SLC ARKTND V++VK+MV  +  +  R+G + K+ AA++AN 
Sbjct: 198 GAAGCIPDVESYGAVINSLCLARKTNDVVKIVKEMV-SKAGISPRKGMLTKVAAALRANR 256

Query: 88  EIKKAVEMVELLEKVGLRVGFEGYEVLVE 2
           EI KA+EM+E +E     V FE YEV+VE
Sbjct: 257 EIWKAIEMIEFVESRDYPVEFESYEVVVE 285


>ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g06270 gi|8844132|gb|AAF80224.1|AC025290_13 Contains
           similarity to an unknown protein F23N19.4 gi|6630464
           from Arabidopsis thaliana gb|AC007190 and contains
           multiple PPR PF|01535 repeats. EST gb|T44174 comes from
           this gene [Arabidopsis thaliana]
           gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis
           thaliana] gi|20465473|gb|AAM20196.1| unknown protein
           [Arabidopsis thaliana] gi|21536601|gb|AAM60933.1|
           unknown [Arabidopsis thaliana]
           gi|332189849|gb|AEE27970.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 343

 Score =  217 bits (553), Expect = 1e-54
 Identities = 112/209 (53%), Positives = 150/209 (71%), Gaps = 1/209 (0%)
 Frame = -3

Query: 625 KTQIIDQILQSLIPIRPRSLPHLTYSYLLSHTLENPDPFPLTFAILQRTLRSGGTPVKQT 446
           + ++ID+ILQS +P+RPRSLP + YS LL++ L++ DP PL+FAILQRTLRSG  P  QT
Sbjct: 78  RIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQT 137

Query: 445 HLSLSSTWITYRK-HDSVPGILSAMRAIGYKPDLNTCNYLVQSLCAVDQFDESVRVLKCM 269
           HL LS  W+  R+   SV  I++ M+ IGY PD  TCNYLV SLCAVD+ DE+++V++ M
Sbjct: 138 HLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEM 197

Query: 268 GHVGCEPNSESYGLVIGSLCGARKTNDAVELVKKMVWVENRVMLRQGTVVKLMAAMKANG 89
              GC P+ ESYG VI SLC ARKT D V++VK+MV  +  +  R+G + K+ AA++AN 
Sbjct: 198 SAAGCIPDVESYGAVINSLCLARKTTDVVKIVKEMV-SKAGISPRKGMLTKVAAALRANR 256

Query: 88  EIKKAVEMVELLEKVGLRVGFEGYEVLVE 2
           EI KA+EM+E +E     V FE YEV+VE
Sbjct: 257 EIWKAIEMIEFVESRDYPVEFESYEVVVE 285