BLASTX nr result
ID: Coptis23_contig00031708
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031708
(350 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containi... 199 2e-49
emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera] 199 2e-49
ref|XP_002320672.1| predicted protein [Populus trichocarpa] gi|2... 195 4e-48
ref|XP_002530602.1| pentatricopeptide repeat-containing protein,... 194 6e-48
ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 188 5e-46
>ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 199 bits (507), Expect = 2e-49
Identities = 95/114 (83%), Positives = 104/114 (91%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NTM+SGYSQ E++ EDAL+CFR+MQ +GY P+DCSFVCVISACSNLSSPSQGKQ+HSLAL
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEHNTVSFNSIIAGYAQHG 7
KSDIP NRISV NALIAMYSKCGNLQDARRLF M EHNTVS NS+IAGYAQHG
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHG 424
Score = 62.4 bits (150), Expect = 4e-08
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NT+IS Y+ + + AL F M+ +G D + VI+AC + QLHS+A+
Sbjct: 109 NTLISAYADCGE-TAPALGLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAV 165
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPE-HNTVSFNSIIAGYAQHGHG 1
S + +SV+NAL+ Y K G+L DA+R+F M + VS+NS+I Y QH G
Sbjct: 166 SSGFD-SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEG 221
Score = 62.0 bits (149), Expect = 5e-08
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
N+MI Y Q ++ S+ AL F+ M R G D + V++A + L S G Q H +
Sbjct: 209 NSMIVAYGQHQEGSK-ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267
Query: 168 KSDIPINRISVSNALIAMYSKC-GNLQDARRLFQTMPEHNTVSFNSIIAGYAQH 10
K+ N V + LI +YSKC G + D R++F+ + E + V +N++++GY+Q+
Sbjct: 268 KTGFHQNS-HVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = -3
Query: 234 VISACSNLSSPSQGKQLHSLALKSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEH 55
++ C S GK LHSL +KS IP + SN I +YSKCG L AR+ FQ + +
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDP 72
Query: 54 NTVSFNSIIAGYAQ 13
N SFN+IIA YA+
Sbjct: 73 NVFSFNAIIAAYAK 86
>emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 199 bits (507), Expect = 2e-49
Identities = 95/114 (83%), Positives = 104/114 (91%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NTM+SGYSQ E++ EDAL+CFR+MQ +GY P+DCSFVCVISACSNLSSPSQGKQ+HSLAL
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEHNTVSFNSIIAGYAQHG 7
KSDIP NRISV NALIAMYSKCGNLQDARRLF M EHNTVS NS+IAGYAQHG
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHG 424
Score = 62.4 bits (150), Expect = 4e-08
Identities = 44/117 (37%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NT+IS Y+ + + AL F M+ +G D + VI+AC + QLHS+A+
Sbjct: 109 NTLISAYADCGE-TAPALGLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAV 165
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPE-HNTVSFNSIIAGYAQHGHG 1
S + +SV+NAL+ Y K G+L DA+R+F M + VS+NS+I Y QH G
Sbjct: 166 SSGFD-SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEG 221
Score = 62.0 bits (149), Expect = 5e-08
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
N+MI Y Q ++ S+ AL F+ M R G D + V++A + L S G Q H +
Sbjct: 209 NSMIVAYGQHQEGSK-ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLI 267
Query: 168 KSDIPINRISVSNALIAMYSKC-GNLQDARRLFQTMPEHNTVSFNSIIAGYAQH 10
K+ N V + LI +YSKC G + D R++F+ + E + V +N++++GY+Q+
Sbjct: 268 KTGFHQNS-HVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = -3
Query: 234 VISACSNLSSPSQGKQLHSLALKSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEH 55
++ C S GK LHSL +KS IP + SN I +YSKCG L AR+ FQ + +
Sbjct: 14 LLKTCIAERDLSTGKSLHSLYIKSFIPPSTY-FSNHFILLYSKCGRLAWARKAFQDISDP 72
Query: 54 NTVSFNSIIAGYAQ 13
N SFN+IIA YA+
Sbjct: 73 NVFSFNAIIAAYAK 86
>ref|XP_002320672.1| predicted protein [Populus trichocarpa] gi|222861445|gb|EEE98987.1|
predicted protein [Populus trichocarpa]
Length = 720
Score = 195 bits (495), Expect = 4e-48
Identities = 90/116 (77%), Positives = 105/116 (90%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NTMISGYSQ ++ S +AL+CFR+MQR GY+PDDCSFVC ISACSNLSSPSQGKQ H+LA+
Sbjct: 312 NTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAM 371
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEHNTVSFNSIIAGYAQHGHG 1
KS+IP N+ISV+NAL+ MYSKCGNLQDAR+LFQ MP+HNTV+ NSIIAGYAQHG G
Sbjct: 372 KSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIG 427
Score = 57.8 bits (138), Expect = 9e-07
Identities = 38/114 (33%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
N+MI Y Q K AL +R M G+ D + V++ S + S G Q H+ A+
Sbjct: 210 NSMIVAYGQ-HKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAI 268
Query: 168 KSDIPINRISVSNALIAMYSKCG-NLQDARRLFQTMPEHNTVSFNSIIAGYAQH 10
K+ NR V + LI MY+KCG + ++R++F+ + + V +N++I+GY+Q+
Sbjct: 269 KTGFNKNR-HVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQN 321
>ref|XP_002530602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529850|gb|EEF31782.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 567
Score = 194 bits (493), Expect = 6e-48
Identities = 91/114 (79%), Positives = 102/114 (89%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NTMIS YS E+ SE+ LDCFRRMQR G+ PDDCSFVCVI ACSNLSSPSQGKQ+H++ +
Sbjct: 312 NTMISAYSLDEELSEETLDCFRRMQRAGFRPDDCSFVCVIRACSNLSSPSQGKQIHAMTV 371
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEHNTVSFNSIIAGYAQHG 7
KS+IP N+ISV+NAL+AMYSKCGNLQDARRLF MPEHNTVSFNSIIAGYAQHG
Sbjct: 372 KSEIPSNQISVNNALVAMYSKCGNLQDARRLFDRMPEHNTVSFNSIIAGYAQHG 425
>ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49710-like [Cucumis sativus]
Length = 720
Score = 188 bits (477), Expect = 5e-46
Identities = 89/116 (76%), Positives = 103/116 (88%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NTMISGYS E S++AL+CFR++Q VG+ PDDCS VCVISACSN+SSPSQG+Q+H LAL
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLAL 370
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPEHNTVSFNSIIAGYAQHGHG 1
K DIP NRISV+NALIAMYSKCGNL+DA+ LF TMPEHNTVS+NS+IAGYAQHG G
Sbjct: 371 KLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426
Score = 58.9 bits (141), Expect = 4e-07
Identities = 39/117 (33%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = -3
Query: 348 NTMISGYSQKEKYSEDALDCFRRMQRVGYYPDDCSFVCVISACSNLSSPSQGKQLHSLAL 169
NT+I+ Y+++ ++ A F M+ D + +I+AC + +QLH+L++
Sbjct: 109 NTLIAAYARRGD-TQPAFQLFLEMREAFLDMDGFTLSGIITACG--INVGLIRQLHALSV 165
Query: 168 KSDIPINRISVSNALIAMYSKCGNLQDARRLFQTMPE-HNTVSFNSIIAGYAQHGHG 1
+ + + +SV NALI YSK G L++ARR+F + E + VS+NS++ Y QH G
Sbjct: 166 VTGLD-SYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREG 221