BLASTX nr result
ID: Coptis23_contig00031432
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031432
(291 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI29825.3| unnamed protein product [Vitis vinifera] 129 2e-28
ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containi... 129 2e-28
ref|XP_002529510.1| pentatricopeptide repeat-containing protein,... 118 6e-25
ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containi... 106 2e-21
ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containi... 106 2e-21
>emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 129 bits (325), Expect = 2e-28
Identities = 56/95 (58%), Positives = 78/95 (82%)
Frame = -1
Query: 291 FNSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKD 112
F P+ FT+N++LH++V+KEVFLLA AVYNQMLK +PNR+TFVIL++G CK GK D
Sbjct: 160 FGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDD 219
Query: 111 AVQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDE 7
A+++FDEM +K + P+TM+YT+++SGLCQ RTD+
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDD 254
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = -1
Query: 279 PNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQL 100
P+T+ +N ++ + + A ++ ++ K+ C P T+ ILI G C+ G + +A Q+
Sbjct: 374 PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQI 433
Query: 99 FDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
F++M SP M + +I GLC+ +EA+
Sbjct: 434 FNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466
Score = 57.4 bits (137), Expect = 1e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = -1
Query: 198 QMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEMVEKRVSPDTMVYTVVISGLCQVN 19
+M K+G P+ + ILI GFC+ G + A+ + ++M ++ +SPDT Y +I G C V
Sbjct: 331 KMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390
Query: 18 RTDEAK 1
D+A+
Sbjct: 391 LLDKAR 396
>ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 129 bits (325), Expect = 2e-28
Identities = 56/95 (58%), Positives = 78/95 (82%)
Frame = -1
Query: 291 FNSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKD 112
F P+ FT+N++LH++V+KEVFLLA AVYNQMLK +PNR+TFVIL++G CK GK D
Sbjct: 160 FGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDD 219
Query: 111 AVQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDE 7
A+++FDEM +K + P+TM+YT+++SGLCQ RTD+
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDD 254
Score = 62.0 bits (149), Expect = 5e-08
Identities = 33/93 (35%), Positives = 55/93 (59%)
Frame = -1
Query: 282 VPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQ 103
V +T + T++ L E + L A+ + Q+ SG P+ T+ +LI+GFCKA + A +
Sbjct: 491 VMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFK 550
Query: 102 LFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEA 4
LF E+ K SPD++ Y +I G +V+R ++A
Sbjct: 551 LFRELQLKGHSPDSVTYGTLIDGFHRVDREEDA 583
Score = 58.5 bits (140), Expect = 5e-07
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = -1
Query: 279 PNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQL 100
P+T+ +N ++ + + A ++ ++ K+ C P T+ ILI G C+ G + +A Q+
Sbjct: 374 PDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQI 433
Query: 99 FDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
F++M SP M + +I GLC+ +EA+
Sbjct: 434 FNQMENLGCSPSIMTFNALIDGLCKAGELEEAR 466
Score = 57.4 bits (137), Expect = 1e-06
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = -1
Query: 198 QMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEMVEKRVSPDTMVYTVVISGLCQVN 19
+M K+G P+ + ILI GFC+ G + A+ + ++M ++ +SPDT Y +I G C V
Sbjct: 331 KMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390
Query: 18 RTDEAK 1
D+A+
Sbjct: 391 LLDKAR 396
>ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531026|gb|EEF32879.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 804
Score = 118 bits (295), Expect = 6e-25
Identities = 52/96 (54%), Positives = 73/96 (76%)
Frame = -1
Query: 291 FNSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKD 112
F+ P+ FT+NTVLH++V KEV LLA +YN+MLK C PN +TF ILI G CK+GK ++
Sbjct: 155 FDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQN 214
Query: 111 AVQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEA 4
A+Q+FDEM ++R+ P+ + YT++ISGLCQ + D A
Sbjct: 215 ALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVA 250
Score = 75.9 bits (185), Expect = 3e-12
Identities = 38/95 (40%), Positives = 59/95 (62%)
Frame = -1
Query: 288 NSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDA 109
N V +T + T++ L + + L A+ + Q+ SG +PN T+ ILIHGFCKAG + A
Sbjct: 484 NRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGA 543
Query: 108 VQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEA 4
+LF E+ K +SPD++ Y +I+GL NR ++A
Sbjct: 544 FKLFKELQLKGLSPDSVTYGTLINGLLSANREEDA 578
Score = 59.3 bits (142), Expect = 3e-07
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1
Query: 204 YNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEMVEKRVSPDTMVYTVVISGLCQ 25
Y +M + P+ + I++ G KAGK KDA++L +EM E+ + PDT Y +I G C
Sbjct: 324 YRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCD 383
Query: 24 VNRTDEAK 1
+ DEAK
Sbjct: 384 LGLLDEAK 391
Score = 55.5 bits (132), Expect = 5e-06
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = -1
Query: 282 VPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQ 103
+PN T+ ++ L + + +A+ ++ M GC P+ T+ L+HGFCK G++ +A+
Sbjct: 228 LPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALG 287
Query: 102 LFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
L + R D Y+ +I GL + R ++A+
Sbjct: 288 LLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQ 321
>ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 106 bits (265), Expect = 2e-21
Identities = 49/97 (50%), Positives = 69/97 (71%)
Frame = -1
Query: 291 FNSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKD 112
F+ P+ F FN +LH LV KE FLLA AVYNQMLK +P+ T+ ILIHG CK K +D
Sbjct: 157 FDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQD 216
Query: 111 AVQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
A+ LFDEM ++ + P+ ++Y++V+SGLCQ + +A+
Sbjct: 217 ALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253
Score = 60.1 bits (144), Expect = 2e-07
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = -1
Query: 267 TFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEM 88
+ ++ L E + L A+ + Q++ SG P+ T+ ILI+GFCK G + A +LF EM
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552
Query: 87 VEKRVSPDTMVYTVVISGLCQVNRTDEA 4
K PD++ Y +I GL + R ++A
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDA 580
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = -1
Query: 279 PNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQL 100
P+T +N ++ + A ++ ++ K C PN T+ ILI G CK G + A +
Sbjct: 371 PDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430
Query: 99 FDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
F EM + P + + +I+GLC+ NR +EA+
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463
Score = 54.7 bits (130), Expect = 8e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = -1
Query: 204 YNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEMVEKRVSPDTMVYTVVISGLCQ 25
Y +ML+ P+ + I+I G + G++ +A+ L EM E+ + PDT+ Y +I G C
Sbjct: 326 YQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCD 385
Query: 24 VNRTDEAK 1
+ DEA+
Sbjct: 386 MGYLDEAE 393
>ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 106 bits (265), Expect = 2e-21
Identities = 49/97 (50%), Positives = 69/97 (71%)
Frame = -1
Query: 291 FNSVPNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKD 112
F+ P+ F FN +LH LV KE FLLA AVYNQMLK +P+ T+ ILIHG CK K +D
Sbjct: 157 FDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQD 216
Query: 111 AVQLFDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
A+ LFDEM ++ + P+ ++Y++V+SGLCQ + +A+
Sbjct: 217 ALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQ 253
Score = 60.1 bits (144), Expect = 2e-07
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = -1
Query: 267 TFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEM 88
+ ++ L E + L A+ + Q++ SG P+ T+ ILI+GFCK G + A +LF EM
Sbjct: 493 SLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEM 552
Query: 87 VEKRVSPDTMVYTVVISGLCQVNRTDEA 4
K PD++ Y +I GL + R ++A
Sbjct: 553 QLKGHMPDSVTYGTLIDGLYRAGRNEDA 580
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = -1
Query: 279 PNTFTFNTVLHLLVEKEVFLLAWAVYNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQL 100
P+T +N ++ + A ++ ++ K C PN T+ ILI G CK G + A +
Sbjct: 371 PDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHI 430
Query: 99 FDEMVEKRVSPDTMVYTVVISGLCQVNRTDEAK 1
F EM + P + + +I+GLC+ NR +EA+
Sbjct: 431 FKEMEKLGCLPSVVTFNSLINGLCKANRLEEAR 463
Score = 54.7 bits (130), Expect = 8e-06
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = -1
Query: 204 YNQMLKSGCSPNRSTFVILIHGFCKAGKMKDAVQLFDEMVEKRVSPDTMVYTVVISGLCQ 25
Y +ML+ P+ + I+I G + G++ +A+ L EM E+ + PDT+ Y +I G C
Sbjct: 326 YQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCD 385
Query: 24 VNRTDEAK 1
+ DEA+
Sbjct: 386 MGYLDEAE 393