BLASTX nr result

ID: Coptis23_contig00031392 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031392
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309611.1| predicted protein [Populus trichocarpa] gi|2...    82   6e-14
ref|XP_002515547.1| tso1, putative [Ricinus communis] gi|2235454...    72   4e-11
ref|XP_002282493.2| PREDICTED: uncharacterized protein LOC100261...    70   2e-10
emb|CBI21012.3| unnamed protein product [Vitis vinifera]               57   2e-06
ref|XP_002324848.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-06

>ref|XP_002309611.1| predicted protein [Populus trichocarpa] gi|222855587|gb|EEE93134.1|
            predicted protein [Populus trichocarpa]
          Length = 847

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 59/146 (40%), Positives = 80/146 (54%), Gaps = 5/146 (3%)
 Frame = +3

Query: 3    LPSPESDTRSPGNLKPHSTRSTTGEGRLDIGFGQEFEYSVTGRLN-FSPRWDGLEDIYNL 179
            LPS      SP N + +     T      +  GQE +Y++T     FSP++D L D  + 
Sbjct: 635  LPSYAKSVSSPSNSQGNDMLPKTSITLDIVSHGQELDYNITEITGQFSPQFDELADFSDH 694

Query: 180  TPLAQPPMNSTDISSPSHSRECAKVSQVQLQ-GSVRLSG--SLCWRTSPITPRPQLSGSK 350
            TPL  P       S+ S +++ A VSQ ++  GS RLS   SL W +SPITP  +L  +K
Sbjct: 695  TPLPNPSSIMMASSASSKTQDKANVSQPRVYPGSARLSSGSSLHWYSSPITPMTRLGETK 754

Query: 351  LCHESDSDIG-YEILEDDTPDILKDT 425
                 DSD G Y+ILEDDTP+ILKD+
Sbjct: 755  N-QAQDSDCGLYDILEDDTPEILKDS 779


>ref|XP_002515547.1| tso1, putative [Ricinus communis] gi|223545491|gb|EEF46996.1| tso1,
            putative [Ricinus communis]
          Length = 873

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
 Frame = +3

Query: 3    LPSPESDTRS-PGNLKPHSTRST--------TGEGRLDI-GFGQEFEYSVTGRLN-FSPR 149
            +PSPESD    P N K  STRS+          +  +DI    Q  +Y+V+  ++ FS +
Sbjct: 653  VPSPESDISILPSNAK--STRSSRYCDTIPEASKETVDIDSCDQGIDYNVSEMMSQFSSK 710

Query: 150  WDGLEDIYNLTPLAQPPMNSTDISSPSHSRECAKVSQVQL-QGSVRLSG--SLCWRTSPI 320
               L DIY+  PL  P   +   S+ S +R+ +  S+ QL  GS RL    S+ W  SPI
Sbjct: 711  CSALADIYDPNPLTNPMTVTLGSSASSKTRDWSSGSRFQLCPGSGRLPSGRSVRWWNSPI 770

Query: 321  TPRPQLSGSKLC-HESDSDIGYEILEDDTPDILKD 422
            TP  +L  +K+  H+SDS + Y ILEDDTP+ILK+
Sbjct: 771  TPMTRLGENKIQGHDSDSGL-YNILEDDTPEILKE 804


>ref|XP_002282493.2| PREDICTED: uncharacterized protein LOC100261127 [Vitis vinifera]
          Length = 1001

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 59/156 (37%), Positives = 81/156 (51%), Gaps = 18/156 (11%)
 Frame = +3

Query: 9    SPESDTR----------SPGNLKPHSTRSTTGEGRLDIG-FGQEFEYSVTGRLN-FSPRW 152
            SPESD            SP N   H+     G+   D+  +  EFEY    +++ F+P  
Sbjct: 769  SPESDFSILSSYGKSPVSPKNSDSHNILPEPGKEIWDMACYEHEFEYGNAEKVDQFTPGC 828

Query: 153  DGLEDIYNLTPLAQP-PMNSTDISSPSHSRECAKVSQVQL-QGSVRL--SGSLCWRTSPI 320
            D L D+ + T L    P  + + S+ S +     VS+ QL  GS  L   GSL WR+SPI
Sbjct: 829  DRLSDVCHFTSLPSSLPTTAMNPSASSKTSGLTNVSRGQLCPGSDHLVSGGSLRWRSSPI 888

Query: 321  TPRPQLSGSKLCH--ESDSDIGYEILEDDTPDILKD 422
             P  QL  +K+    ESD+++ Y+ILEDDTP ILKD
Sbjct: 889  PPSTQLGETKIFQGLESDNEL-YDILEDDTPTILKD 923


>emb|CBI21012.3| unnamed protein product [Vitis vinifera]
          Length = 1094

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 55/154 (35%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
 Frame = +3

Query: 9    SPESDTR----------SPGNLKPHSTRSTTGEGRLDIG-FGQEFEYSVTGRLNFSPRWD 155
            SPESD            SP N   H+     G+   D+  +  EFEY             
Sbjct: 776  SPESDFSILSSYGKSPVSPKNSDSHNILPEPGKEIWDMACYEHEFEYG------------ 823

Query: 156  GLEDIYNLTPLAQPPMNSTDISSPSHSRECAKVSQVQL-QGSVRL--SGSLCWRTSPITP 326
              E +   TP +  P      S+ S +     VS+ QL  GS  L   GSL WR+SPI P
Sbjct: 824  NAEKVDQFTPGSMNP------SASSKTSGLTNVSRGQLCPGSDHLVSGGSLRWRSSPIPP 877

Query: 327  RPQLSGSKLCH--ESDSDIGYEILEDDTPDILKD 422
              QL  +K+    ESD+++ Y+ILEDDTP ILKD
Sbjct: 878  STQLGETKIFQGLESDNEL-YDILEDDTPTILKD 910


>ref|XP_002324848.1| predicted protein [Populus trichocarpa] gi|222866282|gb|EEF03413.1|
           predicted protein [Populus trichocarpa]
          Length = 140

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
 Frame = +3

Query: 219 SSPSHSRECAKVSQVQLQ-GSVRLS--GSLCWRTSPITPRPQLSGSKLCHESDSDIG-YE 386
           SS S +R+ A +SQV L  GS RLS  GSL WR+SPITP  +L  +K     DS  G Y+
Sbjct: 3   SSSSKTRDTAIISQVCLYPGSGRLSSSGSLQWRSSPITPMTRLGETK-TQALDSGCGLYD 61

Query: 387 ILEDDTPDILKDT 425
           ILED TP+I K++
Sbjct: 62  ILEDGTPEIFKES 74


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