BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031381
         (589 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containi...   222   3e-56
emb|CBI22251.3| unnamed protein product [Vitis vinifera]              222   3e-56
emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]   218   5e-55
ref|XP_002530005.1| pentatricopeptide repeat-containing protein,...   218   6e-55
ref|XP_002323875.1| predicted protein [Populus trichocarpa] gi|2...   218   6e-55

>ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 663

 Score =  222 bits (566), Expect = 3e-56
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 5/180 (2%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C TM+ LK IHA+A R NLH H ++LAKI RFAAVSP+G +H+A RLF Q+ QPNTFF
Sbjct: 190 EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 249

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRM-----VNIRDQDMH 186
           YNTLIRGYSK  S S S+ LF +MR N V  D FTFTF+LK RSRM     + +   ++H
Sbjct: 250 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 309

Query: 185 GQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVVSWSGLVVAHVKARELE 6
           G VLKLGF  HLFV NALIHLYA  GVP+ AH+VF+E    DVVSWSGLVVAHV+A ELE
Sbjct: 310 GAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELE 369



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 33/129 (25%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = -3

Query: 413 SGDMHFAHRLFDQMPQPNTFFYNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFV 234
           +G++  A ++F +MP+ +   +  ++ GY++   +  ++ LF++MR   V  DE     V
Sbjct: 365 AGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSV 424

Query: 233 LKARSRMVNIRDQ-DMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDV 57
           + A + + ++    ++H  + + GFG  + + NALI +YA  G   LA +VF+      +
Sbjct: 425 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 484

Query: 56  VSWSGLVVA 30
           ++W+ ++ A
Sbjct: 485 ITWNSMISA 493


>emb|CBI22251.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  222 bits (566), Expect = 3e-56
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 5/180 (2%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C TM+ LK IHA+A R NLH H ++LAKI RFAAVSP+G +H+A RLF Q+ QPNTFF
Sbjct: 3   EACLTMQALKLIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 62

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRM-----VNIRDQDMH 186
           YNTLIRGYSK  S S S+ LF +MR N V  D FTFTF+LK RSRM     + +   ++H
Sbjct: 63  YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 122

Query: 185 GQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVVSWSGLVVAHVKARELE 6
           G VLKLGF  HLFV NALIHLYA  GVP+ AH+VF+E    DVVSWSGLVVAHV+A ELE
Sbjct: 123 GAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELE 182



 Score = 62.0 bits (149), Expect = 7e-08
 Identities = 33/129 (25%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = -3

Query: 413 SGDMHFAHRLFDQMPQPNTFFYNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFV 234
           +G++  A ++F +MP+ +   +  ++ GY++   +  ++ LF++MR   V  DE     V
Sbjct: 178 AGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSV 237

Query: 233 LKARSRMVNIRDQ-DMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDV 57
           + A + + ++    ++H  + + GFG  + + NALI +YA  G   LA +VF+      +
Sbjct: 238 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 297

Query: 56  VSWSGLVVA 30
           ++W+ ++ A
Sbjct: 298 ITWNSMISA 306


>emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  218 bits (556), Expect = 5e-55
 Identities = 114/180 (63%), Positives = 132/180 (73%), Gaps = 5/180 (2%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C  M+ LK IHA A R NLH H ++LAKI RFAAVSP+G +H+A RLF Q+ QPNTFF
Sbjct: 249 EACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 308

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRM-----VNIRDQDMH 186
           YNTLIRGYSK  S S S+ LF +MR N V  D FTFTF+LK RSRM     + +   ++H
Sbjct: 309 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 368

Query: 185 GQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVVSWSGLVVAHVKARELE 6
           G VLKLGF  HLFV NALIHLYA  GVP+ AH+VF+E    DVVSWSGLVVAHV+A ELE
Sbjct: 369 GAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELE 428



 Score =  138 bits (347), Expect = 8e-31
 Identities = 75/146 (51%), Positives = 95/146 (65%), Gaps = 7/146 (4%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C  M+ LK IHA A R NLH H ++LAKI RFAAVSP+G +H+A RLF Q+ QPNTFF
Sbjct: 95  EACLAMQALKLIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFF 154

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRM-----VNIRDQDMH 186
           YNTLIRGYSK  S S S+ LF +MR N V  D FTFTF+LK RSRM     + +   ++H
Sbjct: 155 YNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIH 214

Query: 185 GQVLKLGFGSHL--FVQNALIHLYAT 114
           G  +       L  ++ N ++H+  T
Sbjct: 215 GAGVDYDKYKTLKSYISNKVMHMLPT 240



 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 34/129 (26%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
 Frame = -3

Query: 413 SGDMHFAHRLFDQMPQPNTFFYNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFV 234
           +G++  A ++FD+MP+ +   +  ++ GY++   +  ++ LF++MR   V  DE     V
Sbjct: 424 AGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIV 483

Query: 233 LKARSRMVNIRDQ-DMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDV 57
           + A + + ++    ++H  + + GFG  + + NALI +YA  G   LA +VF+      +
Sbjct: 484 ISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSL 543

Query: 56  VSWSGLVVA 30
           ++W+ ++ A
Sbjct: 544 ITWNSMISA 552


>ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530484|gb|EEF32367.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 499

 Score =  218 bits (555), Expect = 6e-55
 Identities = 109/182 (59%), Positives = 137/182 (75%), Gaps = 7/182 (3%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C +M HLK+IHA ++ T+LH H+V+L K+LRFAAVSPSGD+ +A RLFDQMPQPNTFF
Sbjct: 24  ENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFF 83

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRMVNIRD-------QD 192
           YNT+IRGY+K  S S  ++LF +MR N V  DEFTF F++KARSR+  + +        +
Sbjct: 84  YNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDE 143

Query: 191 MHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVVSWSGLVVAHVKARE 12
           +HG V K GF SHLFVQNALI+LYA  G P+ A +VF+ET   DVVSWSGLV+AHV+  E
Sbjct: 144 IHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGE 203

Query: 11  LE 6
           LE
Sbjct: 204 LE 205



 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
 Frame = -3

Query: 410 GDMHFAHRLFDQMPQPNTFFYNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVL 231
           G++  A ++FD MP+ +   +  ++ GYSK   +  ++ LF +M    +  DE T   V+
Sbjct: 202 GELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVI 261

Query: 230 KARSRMVNIR-DQDMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVV 54
            A + + ++    ++H  + + GFG  + + NALI++YA  G    A +VF+      ++
Sbjct: 262 SACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLI 321

Query: 53  SWSGLVVA 30
           +W+ ++ A
Sbjct: 322 TWNSMISA 329


>ref|XP_002323875.1| predicted protein [Populus trichocarpa] gi|222866877|gb|EEF04008.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  218 bits (555), Expect = 6e-55
 Identities = 113/184 (61%), Positives = 137/184 (74%), Gaps = 9/184 (4%)
 Frame = -3

Query: 530 ETCTTMKHLKRIHAIAIRTNLHCHTVLLAKILRFAAVSPSGDMHFAHRLFDQMPQPNTFF 351
           E C +M  LK+IHA ++   LH H+++LAK+LRFAAVSPSGD+ +A RLFDQ+P PNTFF
Sbjct: 3   EACNSMSRLKQIHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFF 62

Query: 350 YNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFVLKARSRM-VNIRD-------- 198
           YNTLIRGY+K    S S+HL  +MR N V  DEFTF F++KARSR+ VNI          
Sbjct: 63  YNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVEC 122

Query: 197 QDMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDVVSWSGLVVAHVKA 18
            ++HG VLKLGF SHLFV+NALIHLYA  G P +A +VFDET   DVVSWSGLV+AHV+A
Sbjct: 123 DEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRA 182

Query: 17  RELE 6
            ELE
Sbjct: 183 GELE 186



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
 Frame = -3

Query: 413 SGDMHFAHRLFDQMPQPNTFFYNTLIRGYSKCPSASTSIHLFKKMRLNRVPLDEFTFTFV 234
           +G++  A  +FDQMP+ +   + T++  YS+   +  ++ L+  M    V  DE T   V
Sbjct: 182 AGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSV 241

Query: 233 LKARSRMVNIR-DQDMHGQVLKLGFGSHLFVQNALIHLYATMGVPSLAHKVFDETFDPDV 57
           + A + + +++    +H  + + GF   + + NALI +YA  G    A +VF+      +
Sbjct: 242 ISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSL 301

Query: 56  VSWSGLVVAHVKARELEE 3
           V+W+ ++ A    R  E+
Sbjct: 302 VTWNSMISACANNRNPED 319