BLASTX nr result
ID: Coptis23_contig00031335
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031335
(216 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002320961.1| predicted protein [Populus trichocarpa] gi|2... 84 9e-15
ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
gb|ACU33853.1| PPR1 protein [Capsicum annuum] 79 3e-13
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,... 79 3e-13
gb|ABQ50550.1| hypothetical protein [Brassica rapa] 79 4e-13
>ref|XP_002320961.1| predicted protein [Populus trichocarpa] gi|222861734|gb|EEE99276.1|
predicted protein [Populus trichocarpa]
Length = 474
Score = 84.3 bits (207), Expect = 9e-15
Identities = 35/72 (48%), Positives = 55/72 (76%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G+M+EA +VF+LM+++G PN+ TY SL++GYC+ R+ EA++L + RK L PD++ +
Sbjct: 216 GQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTF 275
Query: 181 TTLIGGLCKVGR 216
TT+I GLC+ GR
Sbjct: 276 TTIISGLCRAGR 287
Score = 61.6 bits (148), Expect = 6e-08
Identities = 29/72 (40%), Positives = 43/72 (59%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
GR A +F + G PNI+TY L+ G C+ + EA LFQ++ R +KP++++Y
Sbjct: 286 GRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIY 345
Query: 181 TTLIGGLCKVGR 216
T LI LCK G+
Sbjct: 346 TILIDSLCKCGK 357
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/70 (42%), Positives = 45/70 (64%)
Frame = +1
Query: 4 RMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYT 183
R+EEA + + L +GL P+I+T+ ++ISG CRA R L A +LF+ I P+++ Y
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311
Query: 184 TLIGGLCKVG 213
L+ GLCK G
Sbjct: 312 VLLDGLCKHG 321
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G +EEA +F M ++PN++ Y LI C+ ++ + +LF + + LKP+V Y
Sbjct: 321 GNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTY 380
Query: 181 TTLIGGLCKVG 213
T L+G LCK G
Sbjct: 381 TALVGALCKEG 391
>ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 80.1 bits (196), Expect = 2e-13
Identities = 35/70 (50%), Positives = 51/70 (72%)
Frame = +1
Query: 7 MEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYTT 186
+++A +FNLM RGL PN+ +Y LI+GYC+++R+ EAM LF+++ R+ L PD + Y
Sbjct: 444 VDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNC 503
Query: 187 LIGGLCKVGR 216
LI GLCK GR
Sbjct: 504 LIDGLCKSGR 513
Score = 62.8 bits (151), Expect = 3e-08
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +1
Query: 13 EAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYTTLI 192
EA +F+ G+ P++ +Y LI GYC+ R+ EA+ LF ++ K L P+++ Y++LI
Sbjct: 341 EARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLI 400
Query: 193 GGLCKVGR 216
GLCK GR
Sbjct: 401 DGLCKSGR 408
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G + +A ++ NLM+ RG P+++T+ +L+SGYC V+EA KLF + + PDV Y
Sbjct: 302 GMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSY 361
Query: 181 TTLIGGLCKVGR 216
LI G CK R
Sbjct: 362 NILIIGYCKNNR 373
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +1
Query: 4 RMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYT 183
R++EA ++FN M + L PNI+TY SLI G C++ R+ A +LF I P+VI Y
Sbjct: 373 RIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYN 432
Query: 184 TLIGGLCKV 210
++ LCK+
Sbjct: 433 IMLDALCKI 441
>gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 79.3 bits (194), Expect = 3e-13
Identities = 33/72 (45%), Positives = 56/72 (77%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G+++ A VFN++ ++G++PNI +Y LI+GYC+ + + +AM+LF +IS+K LKPD + Y
Sbjct: 322 GQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTY 381
Query: 181 TTLIGGLCKVGR 216
+T++ GL +VGR
Sbjct: 382 STILHGLIEVGR 393
>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 594
Score = 79.3 bits (194), Expect = 3e-13
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = +1
Query: 4 RMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYT 183
+M+EA VF++M+N+G P++++Y LI GYC++ R+ EA +LF ++S K L P+ I +T
Sbjct: 434 QMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHT 493
Query: 184 TLIGGLCKVGR 216
TLI GLC+ GR
Sbjct: 494 TLISGLCQAGR 504
Score = 70.5 bits (171), Expect = 1e-10
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G + EA ++ NLM+ RGL PN++TY SL+ GYC ++ EA K+F + K PDV+ Y
Sbjct: 398 GMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSY 457
Query: 181 TTLIGGLCKVGR 216
LI G CK R
Sbjct: 458 NILIKGYCKSER 469
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/70 (44%), Positives = 46/70 (65%)
Frame = +1
Query: 4 RMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYT 183
R++EA +F+ M ++GL PN IT+ +LISG C+A R A +LF+ + PD+I Y+
Sbjct: 469 RIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYS 528
Query: 184 TLIGGLCKVG 213
TL+ G CK G
Sbjct: 529 TLLSGFCKHG 538
Score = 60.8 bits (146), Expect = 1e-07
Identities = 27/72 (37%), Positives = 46/72 (63%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
GR A +F M + G P++ITY +L+SG+C+ + EA+ LF+ + + LKP+ ++
Sbjct: 503 GRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVIC 562
Query: 181 TTLIGGLCKVGR 216
L+GG+CK G+
Sbjct: 563 KILLGGMCKAGK 574
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/69 (36%), Positives = 43/69 (62%)
Frame = +1
Query: 7 MEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYTT 186
+ EA ++F M + G+ P ++TY SLI G C + + +A LF+++ +KPDV+ ++
Sbjct: 260 VNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319
Query: 187 LIGGLCKVG 213
L+ LCK G
Sbjct: 320 LVDALCKEG 328
Score = 55.1 bits (131), Expect = 6e-06
Identities = 22/69 (31%), Positives = 46/69 (66%)
Frame = +1
Query: 1 GRMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMY 180
G+ ++A+ +F ML ++P+++T+ L+ C+ VLEA+ +F + + ++PD++ Y
Sbjct: 293 GQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTY 352
Query: 181 TTLIGGLCK 207
++LI G+CK
Sbjct: 353 SSLIHGVCK 361
>gb|ABQ50550.1| hypothetical protein [Brassica rapa]
Length = 281
Score = 79.0 bits (193), Expect = 4e-13
Identities = 33/71 (46%), Positives = 56/71 (78%)
Frame = +1
Query: 4 RMEEAANVFNLMLNRGLEPNIITYRSLISGYCRARRVLEAMKLFQDISRKCLKPDVIMYT 183
R++EA + +LM+++G EP+I+TY +LI+GYC+A+RV++ MKLF++IS + L + + Y+
Sbjct: 25 RLDEANQMMDLMVSKGCEPSIVTYGTLINGYCKAKRVVDGMKLFREISLRGLVANTVTYS 84
Query: 184 TLIGGLCKVGR 216
TLI G C+ G+
Sbjct: 85 TLIQGFCEAGK 95