BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031328
         (1082 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   239   2e-77
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   256   2e-76
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   246   9e-76
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   243   8e-74
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   242   1e-72

>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  239 bits (611), Expect(2) = 2e-77
 Identities = 114/259 (44%), Positives = 170/259 (65%)
 Frame = -1

Query: 1076 DISFEEIKAILFSMEDNKAPGPDGYNAFFFKKCWHIVGEDFVNSIKYMFQHVYMPKSVNS 897
            +I+  E+  + FS+  NK+PGPDGY   FF++ W ++G++   +IK  F + ++PK +NS
Sbjct: 718  EITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNS 777

Query: 896  TFISLVPKGPTPSKVGDYRPIACTNVIYKCVAKLLGQRLQPFMDKLIAPSQSAFIPGRSI 717
            T ++L+PK     ++ DYRPI+C NV+YK ++KLL  RL+  + + IAP+QSAFI  R +
Sbjct: 778  TILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLL 837

Query: 716  QENILLSHELLRSYTRKHGSARCAIKVDLQKAYDSVAWPTIIHMMDALSFPTRFKGWIIS 537
             EN+LL+ EL++ Y +   S RCA+K+DL KA+DSV WP +++ + AL  P +F  WI  
Sbjct: 838  MENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINL 897

Query: 536  CFTSPYFSVMVNGAPHGFFSGKKGLRQGDPLSPYMFVCVMEILNALMLRWLLEKNILPHP 357
            C ++  FSV VN           GLRQG  LSPY+FV  M +L+A++ +  +EK    HP
Sbjct: 898  CISTASFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHP 946

Query: 356  KCSKTRITHLCFADDILVF 300
            +C    +THLCFADDI+VF
Sbjct: 947  RCRNMGLTHLCFADDIMVF 965



 Score = 77.4 bits (189), Expect(2) = 2e-77
 Identities = 37/100 (37%), Positives = 61/100 (61%)
 Frame = -2

Query: 301  FSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSILTGSMISDDGVALANILGVQVVEPPL 122
            FS GS  S++ +  I   F A +GLN++L KS++   S+ S+   ++           P+
Sbjct: 965  FSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDSGSLPV 1024

Query: 121  KYLGLPLVSSRLNIRNCFPLIEKVTGRTSNWKSIHLSHAG 2
            +YLGLPL++ R+ + +C PL+EK+  R S+WK+  LS+AG
Sbjct: 1025 RYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAG 1064


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  256 bits (654), Expect(2) = 2e-76
 Identities = 115/260 (44%), Positives = 179/260 (68%)
 Frame = -1

Query: 1079 KDISFEEIKAILFSMEDNKAPGPDGYNAFFFKKCWHIVGEDFVNSIKYMFQHVYMPKSVN 900
            ++++ EEI+ +LF+M +NK+PGPDGY + FFK  W + G DF+ +I+  F   ++PK +N
Sbjct: 748  REVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLN 807

Query: 899  STFISLVPKGPTPSKVGDYRPIACTNVIYKCVAKLLGQRLQPFMDKLIAPSQSAFIPGRS 720
            +T ++L+PK     ++ DYRPI+C NV+YK ++K+L  RL+  +   I  +QSAF+  R 
Sbjct: 808  ATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERL 867

Query: 719  IQENILLSHELLRSYTRKHGSARCAIKVDLQKAYDSVAWPTIIHMMDALSFPTRFKGWII 540
            + EN+LL+ EL++ Y ++  + RCA+K+D+ KA+DSV W  +++ ++AL+FP  F+ WI 
Sbjct: 868  LMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIK 927

Query: 539  SCFTSPYFSVMVNGAPHGFFSGKKGLRQGDPLSPYMFVCVMEILNALMLRWLLEKNILPH 360
             C ++  FSV VNG   GFF   +GLRQG  LSPY+FV  M +L+ ++    + +NI  H
Sbjct: 928  LCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYH 987

Query: 359  PKCSKTRITHLCFADDILVF 300
            PKC K  +THLCFADD++VF
Sbjct: 988  PKCEKIGLTHLCFADDLMVF 1007



 Score = 57.0 bits (136), Expect(2) = 2e-76
 Identities = 30/100 (30%), Positives = 54/100 (54%)
 Frame = -2

Query: 301  FSKGSIDSVQAIKDILSSFTAATGLNMNLSKSSILTGSMISDDGVALANILGVQVVEPPL 122
            F  G   S++ + ++   F   +GL ++L KS+I    + + D V   +       + P+
Sbjct: 1007 FVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPV 1066

Query: 121  KYLGLPLVSSRLNIRNCFPLIEKVTGRTSNWKSIHLSHAG 2
            +YLGLPL++ ++   +  PLIE V  + S+W +  LS+AG
Sbjct: 1067 RYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAG 1106


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  246 bits (628), Expect(2) = 9e-76
 Identities = 113/259 (43%), Positives = 172/259 (66%)
 Frame = -1

Query: 1079 KDISFEEIKAILFSMEDNKAPGPDGYNAFFFKKCWHIVGEDFVNSIKYMFQHVYMPKSVN 900
            + ++ EEI+ +LF M  +K+PGPDGY + FFK  W I+G++F  +++  F   ++PK +N
Sbjct: 451  RPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGIN 510

Query: 899  STFISLVPKGPTPSKVGDYRPIACTNVIYKCVAKLLGQRLQPFMDKLIAPSQSAFIPGRS 720
            ST ++L+PK     ++ DYRPI+C NV+YK ++K++  RL+  + K IA +QSAF+  R 
Sbjct: 511  STILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRL 570

Query: 719  IQENILLSHELLRSYTRKHGSARCAIKVDLQKAYDSVAWPTIIHMMDALSFPTRFKGWII 540
            + EN+LL+ EL++ Y +   S RCAIK+D+ KA+DSV WP +I++   L FP  F  WI 
Sbjct: 571  LIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWIN 630

Query: 539  SCFTSPYFSVMVNGAPHGFFSGKKGLRQGDPLSPYMFVCVMEILNALMLRWLLEKNILPH 360
             C T+  FSV VNG   G+F   +GLRQG  LSPY+FV  M++L+ ++ +    ++   H
Sbjct: 631  ICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYH 690

Query: 359  PKCSKTRITHLCFADDILV 303
            PKC    +THL FADD++V
Sbjct: 691  PKCKTMGLTHLSFADDLMV 709



 Score = 65.1 bits (157), Expect(2) = 9e-76
 Identities = 33/99 (33%), Positives = 56/99 (56%)
 Frame = -2

Query: 298  SKGSIDSVQAIKDILSSFTAATGLNMNLSKSSILTGSMISDDGVALANILGVQVVEPPLK 119
            S G I S++ I  +   F   +GL ++L KS++    + +     +A+       + P++
Sbjct: 711  SDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVR 770

Query: 118  YLGLPLVSSRLNIRNCFPLIEKVTGRTSNWKSIHLSHAG 2
            YLGLPL++ RL+  +C PL+E+V  R  +W S  LS+AG
Sbjct: 771  YLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAG 809


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  243 bits (620), Expect(2) = 8e-74
 Identities = 110/257 (42%), Positives = 175/257 (68%)
 Frame = -1

Query: 1073 ISFEEIKAILFSMEDNKAPGPDGYNAFFFKKCWHIVGEDFVNSIKYMFQHVYMPKSVNST 894
            +S EEI  ++FSM ++K+PGPDGY A F+K  W+I+G +F+ +I+  F   ++PK +NST
Sbjct: 341  VSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINST 400

Query: 893  FISLVPKGPTPSKVGDYRPIACTNVIYKCVAKLLGQRLQPFMDKLIAPSQSAFIPGRSIQ 714
             ++L+PK     ++ DYRPI+C NV+YK ++K++  RL+  + K I  +QSAF+  R + 
Sbjct: 401  ILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLI 460

Query: 713  ENILLSHELLRSYTRKHGSARCAIKVDLQKAYDSVAWPTIIHMMDALSFPTRFKGWIISC 534
            EN+LL+ E+++ Y +   S+RCA+K+D+ KA+DSV W  +I++++A++FP  F  WI  C
Sbjct: 461  ENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLC 520

Query: 533  FTSPYFSVMVNGAPHGFFSGKKGLRQGDPLSPYMFVCVMEILNALMLRWLLEKNILPHPK 354
             T+  FSV VNG   G FS  + LRQG  LSPY+FV  M++L+ ++ + +  +    HPK
Sbjct: 521  ITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPK 580

Query: 353  CSKTRITHLCFADDILV 303
            C    +THL FADD+++
Sbjct: 581  CRAIGLTHLSFADDLMI 597



 Score = 61.6 bits (148), Expect(2) = 8e-74
 Identities = 33/99 (33%), Positives = 52/99 (52%)
 Frame = -2

Query: 298 SKGSIDSVQAIKDILSSFTAATGLNMNLSKSSILTGSMISDDGVALANILGVQVVEPPLK 119
           S G + S+  I  +L  F   +GL +++ KS++    + +     +       V + P++
Sbjct: 599 SDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVR 658

Query: 118 YLGLPLVSSRLNIRNCFPLIEKVTGRTSNWKSIHLSHAG 2
           YLGLPLVS RL   +C PLIE++  +   W S  LS AG
Sbjct: 659 YLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAG 697


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  242 bits (618), Expect(2) = 1e-72
 Identities = 108/257 (42%), Positives = 172/257 (66%)
 Frame = -1

Query: 1073 ISFEEIKAILFSMEDNKAPGPDGYNAFFFKKCWHIVGEDFVNSIKYMFQHVYMPKSVNST 894
            ++ EEIK ++FSM  +K+PGPDGY + F+K  W I+G++ + +I+  F   ++PK VNST
Sbjct: 174  VTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNST 233

Query: 893  FISLVPKGPTPSKVGDYRPIACTNVIYKCVAKLLGQRLQPFMDKLIAPSQSAFIPGRSIQ 714
             ++L+PK     ++ DYRPI+C NV+YK ++K+L  RL+  + K I  +QSAF+  R + 
Sbjct: 234  ILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLI 293

Query: 713  ENILLSHELLRSYTRKHGSARCAIKVDLQKAYDSVAWPTIIHMMDALSFPTRFKGWIISC 534
            EN+LL+ EL++ Y +   S RCA+K+D+ KA+DS+ W  + H++ A++FP  F  WI  C
Sbjct: 294  ENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLC 353

Query: 533  FTSPYFSVMVNGAPHGFFSGKKGLRQGDPLSPYMFVCVMEILNALMLRWLLEKNILPHPK 354
             ++  FS+ VNG   G+F   +GLRQG  LSPY+FV  M++L+ ++ +    +    HP+
Sbjct: 354  MSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPR 413

Query: 353  CSKTRITHLCFADDILV 303
            C    +THLCFADD+++
Sbjct: 414  CKTLGLTHLCFADDLMI 430



 Score = 58.5 bits (140), Expect(2) = 1e-72
 Identities = 32/97 (32%), Positives = 52/97 (53%)
 Frame = -2

Query: 292 GSIDSVQAIKDILSSFTAATGLNMNLSKSSILTGSMISDDGVALANILGVQVVEPPLKYL 113
           G I SV  I  +L+ F A  GL + + K+++    +       +++     V + P++YL
Sbjct: 434 GKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYL 493

Query: 112 GLPLVSSRLNIRNCFPLIEKVTGRTSNWKSIHLSHAG 2
           GLPLV+ RL   +  PLI+++  R   W S +LS AG
Sbjct: 494 GLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAG 530