BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031320
         (508 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi...   186   2e-45
ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat...   156   2e-36
ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat...   154   7e-36
ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containi...   154   9e-36
ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containi...   153   2e-35

>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
            chloroplastic [Vitis vinifera]
            gi|302143764|emb|CBI22625.3| unnamed protein product
            [Vitis vinifera]
          Length = 880

 Score =  186 bits (471), Expect = 2e-45
 Identities = 87/134 (64%), Positives = 108/134 (80%), Gaps = 2/134 (1%)
 Frame = -3

Query: 506  QMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSLKVGVKSLG--YEDD 333
            +MMR RG++K PGQSWME RN VH FTAGD SHPQI  +HEKI+SL    ++ G  Y+++
Sbjct: 747  RMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQEN 806

Query: 332  AGSSYHSEKLAIAFGLLNTSSMAPIRIIKNLRICVDCHTFTKLVSQLVDREIVVRDGNRF 153
               ++HSEKLA+AFGL++T   APIRIIKN+RIC DCH F   V++LVDREI+VRDGNRF
Sbjct: 807  RALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRF 866

Query: 152  HSFKKGDCSCQGYW 111
            HSFKKG+CSC+GYW
Sbjct: 867  HSFKKGECSCRGYW 880


>ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  156 bits (394), Expect = 2e-36
 Identities = 73/145 (50%), Positives = 100/145 (68%), Gaps = 14/145 (9%)
 Frame = -3

Query: 503  MMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSLKVGVKSLGY------ 342
            +M  RG+KK PGQSW+++++++H F  GDRSHPQ ++++  +  L   +K +GY      
Sbjct: 867  LMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKL 926

Query: 341  -----EDDAGS---SYHSEKLAIAFGLLNTSSMAPIRIIKNLRICVDCHTFTKLVSQLVD 186
                 E++ G    S+HSEKLA+ FG++NT++  PIRIIKNLRIC DCH F K  SQL+D
Sbjct: 927  VMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLD 986

Query: 185  REIVVRDGNRFHSFKKGDCSCQGYW 111
            REI+VRD +RFH FK G CSC  YW
Sbjct: 987  REIIVRDIHRFHHFKHGSCSCGDYW 1011


>ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  154 bits (389), Expect = 7e-36
 Identities = 72/145 (49%), Positives = 99/145 (68%), Gaps = 14/145 (9%)
 Frame = -3

Query: 503  MMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSLKVGVKSLGY------ 342
            +M  RG+KK PGQSW+++++++H F  GDRSHPQ  +++  +  L   +K +GY      
Sbjct: 867  LMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKL 926

Query: 341  -----EDDAGS---SYHSEKLAIAFGLLNTSSMAPIRIIKNLRICVDCHTFTKLVSQLVD 186
                 E++ G    S+HSEKLA+ FG++NT++  PIRIIKNLRIC DCH F K  SQL+D
Sbjct: 927  VMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLD 986

Query: 185  REIVVRDGNRFHSFKKGDCSCQGYW 111
            REI++RD +RFH FK G CSC  YW
Sbjct: 987  REIILRDIHRFHHFKHGGCSCGDYW 1011


>ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  154 bits (388), Expect = 9e-36
 Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 14/146 (9%)
 Frame = -3

Query: 506 QMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSLKVGVKSLGYEDDAG 327
           ++MR R +KK PG SW+EIRN +H F +  ++HP+ N ++EK++ L   ++ +GY  D  
Sbjct: 558 KLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIA 617

Query: 326 S--------------SYHSEKLAIAFGLLNTSSMAPIRIIKNLRICVDCHTFTKLVSQLV 189
           +              SYHSEKLAIA+GL+ T S APIR+IKNLR+CVDCH+  KL+S++ 
Sbjct: 618 AVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVT 677

Query: 188 DREIVVRDGNRFHSFKKGDCSCQGYW 111
           +R I+VRD NRFH F  G CSC  YW
Sbjct: 678 NRMIIVRDANRFHCFGDGGCSCADYW 703


>ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like
            [Brachypodium distachyon]
          Length = 886

 Score =  153 bits (386), Expect = 2e-35
 Identities = 71/135 (52%), Positives = 91/135 (67%), Gaps = 3/135 (2%)
 Frame = -3

Query: 506  QMMRARGLKKCPGQSWMEIRNKVHHFTAGDRSHPQINDLHEKIKSLKVGVKSLGY---ED 336
            ++MR +G+KK PG SWME+ N+VH F A D SHPQ+  + EK+  L   +  LGY   E 
Sbjct: 752  KLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTES 811

Query: 335  DAGSSYHSEKLAIAFGLLNTSSMAPIRIIKNLRICVDCHTFTKLVSQLVDREIVVRDGNR 156
                 +HSEKLA+AFG+++  +  PI I+KNLRIC DCHT  KL+S + DRE V+RDG R
Sbjct: 812  PRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVR 871

Query: 155  FHSFKKGDCSCQGYW 111
            FH FK G CSC  YW
Sbjct: 872  FHHFKGGSCSCMDYW 886