BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031311
         (454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   165   3e-39
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl...   164   5e-39
gb|AAD12998.1| pol polyprotein [Zea mays]                             162   3e-38
emb|CAN69679.1| hypothetical protein VITISV_006037 [Vitis vinifera]   162   3e-38
emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera]   161   4e-38

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  165 bits (418), Expect = 3e-39
 Identities = 84/149 (56%), Positives = 106/149 (71%)
 Frame = -2

Query: 450  GFSIKGQEHKVCKLNRSIYGLKQASRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKNGFV 271
            GF++     KVCKL+RSIYGLKQASR WNLRF+EA+ +  F    E+ CVY KTS +   
Sbjct: 574  GFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVA 633

Query: 270  ILSLYVDDILLAGNNKALINSTKEWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 91
             L LYVDDILL GN+  L+ S K WL   F MKDMGEA+Y+LG++I RDR  +++ LSQ+
Sbjct: 634  FLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQD 693

Query: 90   TYIKKVLERFNMTDCKQVDLPVSLGESLS 4
            TYI KVL RFNM D K+  +P+S G +LS
Sbjct: 694  TYIDKVLHRFNMHDSKKGFIPMSHGITLS 722


>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
          Length = 1321

 Score =  164 bits (416), Expect = 5e-39
 Identities = 81/146 (55%), Positives = 102/146 (69%)
 Frame = -2

Query: 450  GFSIKGQEHKVCKLNRSIYGLKQASRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKNGFV 271
            GFS    EH VCKLN+SIYGLKQASRQW L+FH  +    F+    D C+Y K S +   
Sbjct: 932  GFSSNSGEHLVCKLNKSIYGLKQASRQWYLKFHGIISSFGFDENPMDQCIYHKVSGSKIC 991

Query: 270  ILSLYVDDILLAGNNKALINSTKEWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 91
             L LYVDDILLA N++ L++  K++LS NF+MKDMG+ASYV+G+KI RDR + +L LSQE
Sbjct: 992  FLVLYVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQE 1051

Query: 90   TYIKKVLERFNMTDCKQVDLPVSLGE 13
            TYI K+LERF M DC     P+  G+
Sbjct: 1052 TYINKILERFRMKDCSPSVAPIVKGD 1077


>gb|AAD12998.1| pol polyprotein [Zea mays]
          Length = 998

 Score =  162 bits (410), Expect = 3e-38
 Identities = 79/146 (54%), Positives = 105/146 (71%)
 Frame = -2

Query: 450  GFSIKGQEHKVCKLNRSIYGLKQASRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKNGFV 271
            GF + G+EH  C L RSIYGLKQASRQW ++F + + +  FE   ED+C+Y K  K  ++
Sbjct: 609  GFVVSGKEHMGCHLRRSIYGLKQASRQWYIKFDQTIRKFGFEENKEDNCIYAKFRKGKYI 668

Query: 270  ILSLYVDDILLAGNNKALINSTKEWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 91
             L LYVDDILLA ++K L+  TK +LS NF+MKDMGEASYVLG++I RDR KR+L LSQ+
Sbjct: 669  FLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEIRRDRQKRVLGLSQK 728

Query: 90   TYIKKVLERFNMTDCKQVDLPVSLGE 13
            +YI+ VL+R+NM  C     P+  G+
Sbjct: 729  SYIENVLKRYNMHKCNASPGPIVKGD 754


>emb|CAN69679.1| hypothetical protein VITISV_006037 [Vitis vinifera]
          Length = 968

 Score =  162 bits (410), Expect = 3e-38
 Identities = 77/149 (51%), Positives = 106/149 (71%)
 Frame = -2

Query: 450 GFSIKGQEHKVCKLNRSIYGLKQASRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKNGFV 271
           GF+  G+EH VCKLN+SIYGLKQASRQW L+F + + Q+ F+    D C+Y++ S + ++
Sbjct: 544 GFTEVGKEHLVCKLNKSIYGLKQASRQWYLKFDKIITQNSFKENIVDRCIYLRVSGSSYI 603

Query: 270 ILSLYVDDILLAGNNKALINSTKEWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQE 91
            L LYVDDILL  N+  L+  TK  LS +F+MKD+GEASY+LG+KI RDR   +L LSQ 
Sbjct: 604 FLVLYVDDILLVSNDSDLLIETKHMLSTHFDMKDLGEASYILGIKILRDRANGVLKLSQR 663

Query: 90  TYIKKVLERFNMTDCKQVDLPVSLGESLS 4
           TYI+K+L+ FNM +C    +P+  G+  S
Sbjct: 664 TYIEKILKSFNMHNCSSNRVPIVKGDEFS 692


>emb|CAN63575.1| hypothetical protein VITISV_003796 [Vitis vinifera]
          Length = 1305

 Score =  161 bits (408), Expect = 4e-38
 Identities = 79/150 (52%), Positives = 103/150 (68%)
 Frame = -2

Query: 453  TGFSIKGQEHKVCKLNRSIYGLKQASRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKNGF 274
            TGF+  G+E  VCKLN SIYG KQASRQW L+F   + Q  F+    D C+Y++ S + +
Sbjct: 802  TGFAKVGKEDLVCKLNNSIYGHKQASRQWYLKFDRIITQKGFKENTVDRCIYLRVSGSSY 861

Query: 273  VILSLYVDDILLAGNNKALINSTKEWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSLSQ 94
            + L LYVDDILLA N+  L+  TK  LS +F+MKD+GEASYVLG+KI RDR   +L LSQ
Sbjct: 862  IFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLGIKILRDRANGVLKLSQ 921

Query: 93   ETYIKKVLERFNMTDCKQVDLPVSLGESLS 4
              YI+K+L+RFNM +CK    P+  G+  S
Sbjct: 922  RAYIEKILKRFNMHNCKSTKAPIVKGDKFS 951