BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031288
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat...   106   2e-21
emb|CBI18084.3| unnamed protein product [Vitis vinifera]              105   4e-21
ref|XP_002526706.1| pentatricopeptide repeat-containing protein,...   105   4e-21
ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|2...    97   2e-18
ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat...    93   2e-17

>ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/80 (60%), Positives = 62/80 (77%)
 Frame = -1

Query: 241 NHARLVFDKVEEPNTYVLNTMIQGFVSNNCHTETIEFYTLMRRDGLAPNNMTFPFVLKAC 62
           N+ R +F ++++PN ++ NTMI+G VSN+C  + IEFY LMR +G  PNN TFPFVLKAC
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 61  ARLSDFQLGLKIHTHVLKVG 2
           ARL D QLG+KIHT V+K G
Sbjct: 123 ARLLDLQLGVKIHTLVVKGG 142


>emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  105 bits (262), Expect = 4e-21
 Identities = 47/78 (60%), Positives = 61/78 (78%)
 Frame = -1

Query: 241 NHARLVFDKVEEPNTYVLNTMIQGFVSNNCHTETIEFYTLMRRDGLAPNNMTFPFVLKAC 62
           N+ R +F ++++PN ++ NTMI+G VSN+C  + IEFY LMR +G  PNN TFPFVLKAC
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 61  ARLSDFQLGLKIHTHVLK 8
           ARL D QLG+KIHT V+K
Sbjct: 123 ARLLDLQLGVKIHTLVVK 140


>ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534006|gb|EEF35728.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 461

 Score =  105 bits (262), Expect = 4e-21
 Identities = 46/79 (58%), Positives = 64/79 (81%)
 Frame = -1

Query: 238 HARLVFDKVEEPNTYVLNTMIQGFVSNNCHTETIEFYTLMRRDGLAPNNMTFPFVLKACA 59
           + RL+F++++EP+  + NTMI+G VS++C TE+IEFY  MR+ G  PNN TFPFV+KACA
Sbjct: 66  YTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACA 125

Query: 58  RLSDFQLGLKIHTHVLKVG 2
           RL DFQLG+ +HT V+K+G
Sbjct: 126 RLLDFQLGIMMHTLVVKLG 144


>ref|XP_002323645.1| predicted protein [Populus trichocarpa] gi|222868275|gb|EEF05406.1|
           predicted protein [Populus trichocarpa]
          Length = 682

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 42/82 (51%), Positives = 63/82 (76%)
 Frame = -1

Query: 247 NPNHARLVFDKVEEPNTYVLNTMIQGFVSNNCHTETIEFYTLMRRDGLAPNNMTFPFVLK 68
           N N++  + D+ +EPN ++ NTMI+G V N+C  E+IE Y  MR++GL+P++ TFPFVLK
Sbjct: 57  NTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLK 116

Query: 67  ACARLSDFQLGLKIHTHVLKVG 2
           ACAR+ D +LG+K+H+ V+K G
Sbjct: 117 ACARVLDSELGVKMHSLVVKAG 138


>ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 43/80 (53%), Positives = 57/80 (71%)
 Frame = -1

Query: 241 NHARLVFDKVEEPNTYVLNTMIQGFVSNNCHTETIEFYTLMRRDGLAPNNMTFPFVLKAC 62
           N+++LVF +V+EPN ++ NTMI+G VS +C  + I  Y  MR  G  PNN T PFVLKAC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 61  ARLSDFQLGLKIHTHVLKVG 2
           AR  D +LGLKIH+ ++K G
Sbjct: 125 ARKLDVRLGLKIHSLLVKAG 144