BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031264
         (218 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520663.1| conserved hypothetical protein [Ricinus comm...    72   5e-11
ref|XP_002271898.1| PREDICTED: uncharacterized protein LOC100258...    72   6e-11
ref|NP_568185.1| Mitochondrial transcription termination factor ...    71   1e-10
ref|XP_002271867.1| PREDICTED: uncharacterized protein LOC100263...    70   1e-10
ref|XP_002871294.1| mitochondrial transcription termination fact...    70   2e-10

>ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis]
           gi|223540048|gb|EEF41625.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 377

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 35/62 (56%), Positives = 48/62 (77%)
 Frame = -1

Query: 218 EKRIIPRTSVIKVLVSNGVVKKTHSIHRVLRVTDKVFLDEFVMKYEEKIPELRNVYQGKM 39
           EKRI+PR  VI+VL++ G+VKK  S+  VL  T+K FLD FV+KYEE++P L  VY+GK+
Sbjct: 312 EKRIVPRCRVIRVLMNKGLVKKDVSLATVLVPTEKCFLDRFVIKYEEEVPLLLRVYEGKI 371

Query: 38  NV 33
           +V
Sbjct: 372 DV 373


>ref|XP_002271898.1| PREDICTED: uncharacterized protein LOC100258309 [Vitis vinifera]
           gi|297744182|emb|CBI37152.3| unnamed protein product
           [Vitis vinifera]
          Length = 412

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = -1

Query: 218 EKRIIPRTSVIKVLVSNGVVKKTHSIHRVLRVTDKVFLDEFVMKYEEKIPELRNVYQGKM 39
           EKRIIPR SV KVL+  G+VKK  S+   L++T+K F D FV+KY+  IP+L N+Y+G++
Sbjct: 335 EKRIIPRCSVGKVLILKGLVKKDLSLGAFLKLTEKKFFDRFVIKYQNHIPQLLNLYKGEV 394

Query: 38  NVL*LPF 18
            VL L F
Sbjct: 395 GVLELGF 401


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/58 (60%), Positives = 46/58 (79%)
 Frame = -1

Query: 218 EKRIIPRTSVIKVLVSNGVVKKTHSIHRVLRVTDKVFLDEFVMKYEEKIPELRNVYQG 45
           EKRIIPR SV KVLVSNG+VK+  S+  +L   +KVFL++ V+KYEE++PEL N+Y G
Sbjct: 344 EKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMNLYLG 401


>ref|XP_002271867.1| PREDICTED: uncharacterized protein LOC100263451 [Vitis vinifera]
          Length = 412

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = -1

Query: 218 EKRIIPRTSVIKVLVSNGVVKKTHSIHRVLRVTDKVFLDEFVMKYEEKIPELRNVYQGKM 39
           EKRIIPR SV +VL+  G+VKK   +   LR T+K FLD FV+KY+  IP+L N+++G++
Sbjct: 335 EKRIIPRCSVARVLILKGLVKKDMGLGAFLRFTEKKFLDRFVIKYQNHIPQLLNLFKGEV 394

Query: 38  NVL*LPF 18
            +L L F
Sbjct: 395 GILELGF 401


>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 35/58 (60%), Positives = 46/58 (79%)
 Frame = -1

Query: 218 EKRIIPRTSVIKVLVSNGVVKKTHSIHRVLRVTDKVFLDEFVMKYEEKIPELRNVYQG 45
           EKRIIPR SV KVLVSNG+VK+  S+  +L   +KVFL++ V+KYEE++PEL +VY G
Sbjct: 343 EKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKVFLEKLVIKYEEELPELMDVYLG 400