BLASTX nr result
ID: Coptis23_contig00031256
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031256
(252 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containi... 91 8e-17
ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containi... 91 8e-17
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 89 3e-16
gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical ... 89 4e-16
ref|NP_564401.1| pentatricopeptide repeat-containing protein [Ar... 89 4e-16
>ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 91.3 bits (225), Expect = 8e-17
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
GL EEA +VFD M E+D +WNT++ G+VK G M+ A F MP+RN +W M+ GY
Sbjct: 227 GLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYC 286
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
KA ++ AR++F KM KN+VSW
Sbjct: 287 KAGDMEMARMLFDKMPVKNLVSW 309
Score = 70.1 bits (170), Expect = 2e-10
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 CGLMEEAERVFDRM-SERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISG 177
CG+ A+++F M + RDV +WN++ISG K G E A+ F MP+++ +W M+ G
Sbjct: 195 CGI-SAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDG 253
Query: 178 YAKATSVKAARLMFMKMTEKNVVSW 252
Y K + A +F +M E+NVVSW
Sbjct: 254 YVKVGKMDDAFKLFDEMPERNVVSW 278
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/75 (37%), Positives = 50/75 (66%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G M++A ++FD M ER+V +W+T++ G+ K G+ME A+ F +MP +N +W ++SG+A
Sbjct: 258 GKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFA 317
Query: 184 KATSVKAARLMFMKM 228
+ + A +F +M
Sbjct: 318 EKGLAREAISLFDQM 332
>ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 91.3 bits (225), Expect = 8e-17
Identities = 41/83 (49%), Positives = 56/83 (67%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
GL EEA +VFD M E+D +WNT++ G+VK G M+ A F MP+RN +W M+ GY
Sbjct: 201 GLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYC 260
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
KA ++ AR++F KM KN+VSW
Sbjct: 261 KAGDMEMARMLFDKMPVKNLVSW 283
Score = 70.1 bits (170), Expect = 2e-10
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 CGLMEEAERVFDRM-SERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISG 177
CG+ A+++F M + RDV +WN++ISG K G E A+ F MP+++ +W M+ G
Sbjct: 169 CGI-SAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDG 227
Query: 178 YAKATSVKAARLMFMKMTEKNVVSW 252
Y K + A +F +M E+NVVSW
Sbjct: 228 YVKVGKMDDAFKLFDEMPERNVVSW 252
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/75 (37%), Positives = 50/75 (66%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G M++A ++FD M ER+V +W+T++ G+ K G+ME A+ F +MP +N +W ++SG+A
Sbjct: 232 GKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFA 291
Query: 184 KATSVKAARLMFMKM 228
+ + A +F +M
Sbjct: 292 EKGLAREAISLFDQM 306
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 89.4 bits (220), Expect = 3e-16
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G + EA R+FD M ERD +WNT++ G+VK G M AA F++MP RN +W M+ GY+
Sbjct: 197 GELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYS 256
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
KA + AR++F KM KN+V W
Sbjct: 257 KAGDMDMARILFDKMPVKNLVPW 279
Score = 79.0 bits (193), Expect = 4e-13
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +1
Query: 1 CGL--MEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMIS 174
CGL + A +VF+ M+ERD +WN++I G VK G + A+ F MP+R+ +W ++
Sbjct: 163 CGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILD 222
Query: 175 GYAKATSVKAARLMFMKMTEKNVVSW 252
GY KA + AA +F KM +NVVSW
Sbjct: 223 GYVKAGEMNAAFELFEKMPARNVVSW 248
Score = 60.5 bits (145), Expect = 1e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G M A +F++M R+V +W+T++ G+ K G+M+ A+ F +MP +N W MISGYA
Sbjct: 228 GEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287
Query: 184 KATSVKAARLMFMKMTE 234
+ K A ++ +M E
Sbjct: 288 EKGLAKDAINLYNQMEE 304
>gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
gb|AV533492 come from this gene [Arabidopsis thaliana]
Length = 864
Score = 89.0 bits (219), Expect = 4e-16
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G E+A +FD M ER+V +WNTL++G +++G+ME AK F MP R+ +W AMI GY
Sbjct: 255 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 314
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
+ ++ A+L+F M+EKNVV+W
Sbjct: 315 ENDGMEEAKLLFGDMSEKNVVTW 337
Score = 82.0 bits (201), Expect = 5e-14
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G ME+A++VFD M RDV +WN +I G++++ ME AK F M ++N TW +M+ GY
Sbjct: 286 GDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYC 345
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
+ V+ A +F +M E+N+VSW
Sbjct: 346 RYGDVREAYRLFCEMPERNIVSW 368
Score = 61.6 bits (148), Expect = 6e-08
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = +1
Query: 10 MEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYAKA 189
MEEA+ +F MSE++V W +++ G+ + G++ A F MP+RN +W AMISG+A
Sbjct: 319 MEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWN 378
Query: 190 TSVKAARLMFMKM 228
+ A ++F++M
Sbjct: 379 ELYREALMLFLEM 391
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERD----VQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMI 171
G + A + D++ +R V W +L+S + K G ++ A+ F+ MP+RN T AM+
Sbjct: 159 GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAML 218
Query: 172 SGYAKATSVKAARLMFMKMTEKNVVSW 252
+GY K + A +F +M KNVVSW
Sbjct: 219 TGYVKCRRMNEAWTLFREM-PKNVVSW 244
Score = 55.5 bits (132), Expect = 5e-06
Identities = 26/84 (30%), Positives = 45/84 (53%)
Frame = +1
Query: 1 CGLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGY 180
C M EA +F M ++V +W +++ DG E A F MP+RN +W +++G
Sbjct: 224 CRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGL 282
Query: 181 AKATSVKAARLMFMKMTEKNVVSW 252
+ ++ A+ +F M ++VVSW
Sbjct: 283 IRNGDMEKAKQVFDAMPSRDVVSW 306
>ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g32415, mitochondrial; Flags: Precursor
gi|332193363|gb|AEE31484.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 89.0 bits (219), Expect = 4e-16
Identities = 39/83 (46%), Positives = 58/83 (69%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G E+A +FD M ER+V +WNTL++G +++G+ME AK F MP R+ +W AMI GY
Sbjct: 152 GRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYI 211
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
+ ++ A+L+F M+EKNVV+W
Sbjct: 212 ENDGMEEAKLLFGDMSEKNVVTW 234
Score = 82.0 bits (201), Expect = 5e-14
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYA 183
G ME+A++VFD M RDV +WN +I G++++ ME AK F M ++N TW +M+ GY
Sbjct: 183 GDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYC 242
Query: 184 KATSVKAARLMFMKMTEKNVVSW 252
+ V+ A +F +M E+N+VSW
Sbjct: 243 RYGDVREAYRLFCEMPERNIVSW 265
Score = 61.6 bits (148), Expect = 6e-08
Identities = 28/73 (38%), Positives = 47/73 (64%)
Frame = +1
Query: 10 MEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGYAKA 189
MEEA+ +F MSE++V W +++ G+ + G++ A F MP+RN +W AMISG+A
Sbjct: 216 MEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWN 275
Query: 190 TSVKAARLMFMKM 228
+ A ++F++M
Sbjct: 276 ELYREALMLFLEM 288
Score = 56.2 bits (134), Expect = 3e-06
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Frame = +1
Query: 4 GLMEEAERVFDRMSERD----VQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMI 171
G + A + D++ +R V W +L+S + K G ++ A+ F+ MP+RN T AM+
Sbjct: 56 GGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAML 115
Query: 172 SGYAKATSVKAARLMFMKMTEKNVVSW 252
+GY K + A +F +M KNVVSW
Sbjct: 116 TGYVKCRRMNEAWTLFREM-PKNVVSW 141
Score = 55.5 bits (132), Expect = 5e-06
Identities = 26/84 (30%), Positives = 45/84 (53%)
Frame = +1
Query: 1 CGLMEEAERVFDRMSERDVQAWNTLISGFVKDGNMEAAKSFFKRMPDRNDFTWEAMISGY 180
C M EA +F M ++V +W +++ DG E A F MP+RN +W +++G
Sbjct: 121 CRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGL 179
Query: 181 AKATSVKAARLMFMKMTEKNVVSW 252
+ ++ A+ +F M ++VVSW
Sbjct: 180 IRNGDMEKAKQVFDAMPSRDVVSW 203