BLASTX nr result
ID: Coptis23_contig00031248
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis23_contig00031248 (970 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containi... 429 e-118 ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|2... 393 e-107 ref|NP_172391.2| pentatricopeptide repeat-containing protein [Ar... 386 e-105 ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containi... 384 e-104 emb|CBI39579.3| unnamed protein product [Vitis vinifera] 374 e-101 >ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Vitis vinifera] Length = 485 Score = 429 bits (1103), Expect = e-118 Identities = 200/322 (62%), Positives = 255/322 (79%) Frame = -1 Query: 967 MRRDGREVERRILTLLHGHNTRTHLKQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYA 788 M R RE ERRIL LHG TRT L QIHAH +RH+LHQSN +L+HFIS+CG L M YA Sbjct: 1 MSRVCREAERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYA 60 Query: 787 SLIFVHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNV 608 +L+F TQ PN+L+FNSMIKGYS+ GPS+ L +++ MK R IWPD++TFAPLLKSC+ + Sbjct: 61 NLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGI 120 Query: 607 TEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMI 428 + G+ VHG ++ VGFE ++ ++IG+++ YTSC RM DAK+VFD M +DV+VWNMMI Sbjct: 121 CDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMI 180 Query: 427 RGSCKEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDA 248 RG CK G+++MGF +F+QMR+RS VSWN MI GL QSGRD ALE+F++M D GFE DDA Sbjct: 181 RGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDA 240 Query: 247 TLVTVLPVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDK 68 T+VT+LPVCARLGA ++G WIHSYA+S L + F+ VGNSL+DFY KCG LE AWR F++ Sbjct: 241 TVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNE 300 Query: 67 MPKKSVVSWNTMISGLAYNGQG 2 MP+K+VVSWN MISGL +NG+G Sbjct: 301 MPQKNVVSWNAMISGLTFNGKG 322 Score = 80.9 bits (198), Expect = 4e-13 Identities = 61/254 (24%), Positives = 111/254 (43%), Gaps = 2/254 (0%) Frame = -1 Query: 781 IFVHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTE 602 +F + +++ +NSMI G SG L+++ M PD T +L C + Sbjct: 195 LFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGA 254 Query: 601 VSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVV-VWNMMIR 425 V G +H Y R+ ++D + V N ++ Sbjct: 255 VDVGEWIHS--------------------YAESSRL-----------LRDFISVGNSLVD 283 Query: 424 GSCKEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDAT 245 CK G ++ + VF +M +++ VSWN MI GL +G+ + ++F++M+++G +DAT Sbjct: 284 FYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDAT 343 Query: 244 LVTVLPVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKM 65 V VL CA G E G + + + ++ ++D + G +E A M Sbjct: 344 FVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTM 403 Query: 64 P-KKSVVSWNTMIS 26 P + + V W +++S Sbjct: 404 PMRPNAVLWGSLLS 417 >ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa] Length = 485 Score = 393 bits (1010), Expect = e-107 Identities = 185/322 (57%), Positives = 248/322 (77%) Frame = -1 Query: 967 MRRDGREVERRILTLLHGHNTRTHLKQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYA 788 M R RE+ER IL LLHG TRT L++IHAHF+RH L+Q N +L+HF+SICG L M YA Sbjct: 1 MSRACREIERNILRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYA 60 Query: 787 SLIFVHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNV 608 + IF TQ P I++FN+MIKGYS++GP + ++++ MK R IWPD+YT APLLK+C+++ Sbjct: 61 NRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSL 120 Query: 607 TEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMI 428 + G+ +H E++ VGFE ++ ++IG++E Y+SC M DA++VFD M +DV+VWN+MI Sbjct: 121 GVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMI 180 Query: 427 RGSCKEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDA 248 G CK G+VDMG +F+QMR+RS VSWNIMI LAQS RD AL +F MLD GF+ D+A Sbjct: 181 HGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEA 240 Query: 247 TLVTVLPVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDK 68 T+VTVLP+CARLG+ ++G WIHSYA S GL++ FV VGN+L+DFY+K G E A R FD+ Sbjct: 241 TVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDE 300 Query: 67 MPKKSVVSWNTMISGLAYNGQG 2 MP+K+V+SWNT+ISGLA NG G Sbjct: 301 MPRKNVISWNTLISGLALNGNG 322 Score = 69.3 bits (168), Expect = 1e-09 Identities = 70/307 (22%), Positives = 117/307 (38%), Gaps = 35/307 (11%) Frame = -1 Query: 823 SICGKLRLMPYASLIFVHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDI----- 659 S CG +M A +F +++V+N MI G+ G L ++ M+ R + Sbjct: 153 SSCG---VMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNI 209 Query: 658 -----------------------W---PDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVG 557 W PD+ T +L C + V G+ +H G Sbjct: 210 MISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSG 269 Query: 556 -FELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKEGNVDMGFHVF 380 + + V LV+FY A+RVFD Sbjct: 270 LYRDFVAVGNALVDFYNKSGMFETARRVFD------------------------------ 299 Query: 379 QQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDATLVTVLPVCARLGASE 200 +M ++ +SWN +I GLA +G + +E+ ++M++EG +DAT V VL CA G E Sbjct: 300 -EMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFE 358 Query: 199 LG-SWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMP--KKSVVSWNTMI 29 G + S + + K G ++D + G + A+ MP + W +++ Sbjct: 359 RGRELLASMVEHHQIEPKLEHYG-CMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLL 417 Query: 28 SGLAYNG 8 S +G Sbjct: 418 SACRTHG 424 >ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190 gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein homolog TM021B04.10 gb|2191192 from A. thaliana BAC gb|AF007271 [Arabidopsis thaliana] gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana] gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 484 Score = 386 bits (992), Expect = e-105 Identities = 183/316 (57%), Positives = 239/316 (75%) Frame = -1 Query: 949 EVERRILTLLHGHNTRTHLKQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYASLIFVH 770 E+ER++L LLHGHNTRT L +IHAH +RH LH SN LLAHFISICG L YA+ +F H Sbjct: 2 EIERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSH 61 Query: 769 TQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTEVSFG 590 Q PN+LVFN+MIK YS+ GP L ++ MK R IW D+YT+APLLKSC++++++ FG Sbjct: 62 IQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFG 121 Query: 589 RKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSCKE 410 + VHGE++R GF ++IG+VE YTS RMGDA++VFD M ++VVVWN+MIRG C Sbjct: 122 KCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDS 181 Query: 409 GNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDATLVTVL 230 G+V+ G H+F+QM ERS VSWN MI L++ GRD ALE+F +M+D+GF+ D+AT+VTVL Sbjct: 182 GDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVL 241 Query: 229 PVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKKSV 50 P+ A LG + G WIHS A+S GLF+ F+ VGN+L+DFY K GDLE A F KM +++V Sbjct: 242 PISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNV 301 Query: 49 VSWNTMISGLAYNGQG 2 VSWNT+ISG A NG+G Sbjct: 302 VSWNTLISGSAVNGKG 317 Score = 86.3 bits (212), Expect = 1e-14 Identities = 66/302 (21%), Positives = 133/302 (44%), Gaps = 7/302 (2%) Frame = -1 Query: 892 KQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYASLIFVHTQTPNILVFNSMIKGYSIS 713 K +H IR H+ + + + M A +F N++V+N MI+G+ S Sbjct: 122 KCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDS 181 Query: 712 GPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQ 533 G +R L ++ M R I ++ ++ S + ++ E++ GF+ Sbjct: 182 GDVERGLHLFKQMSERSI----VSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATV 237 Query: 532 IGLVEFYTSCKRMGDAKRVFDMMP----VKD-VVVWNMMIRGSCKEGNVDMGFHVFQQMR 368 + ++ S + K + KD + V N ++ CK G+++ +F++M+ Sbjct: 238 VTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ 297 Query: 367 ERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEG-FELDDATLVTVLPVCARLGASELGS 191 R+ VSWN +I G A +G+ +++F M++EG ++AT + VL C+ G E G Sbjct: 298 RRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGE 357 Query: 190 WIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMP-KKSVVSWNTMISGLAY 14 + R + + +++D + G + A++ MP + W +++S Sbjct: 358 ELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRS 417 Query: 13 NG 8 +G Sbjct: 418 HG 419 >ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Glycine max] Length = 483 Score = 384 bits (987), Expect = e-104 Identities = 179/318 (56%), Positives = 236/318 (74%) Frame = -1 Query: 955 GREVERRILTLLHGHNTRTHLKQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYASLIF 776 GRE+ER+IL LLHG TR+HL +IH HF+RH L QSN +LAHF+S+C LR +PYA+ +F Sbjct: 4 GREIERKILRLLHGGKTRSHLTEIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLF 63 Query: 775 VHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTEVS 596 HT PNIL+FN++IK +S+ P ++LMK R I PD+YT APL KS +N+ Sbjct: 64 AHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYV 123 Query: 595 FGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMIRGSC 416 G VH +VR+GF + V++ +E Y SC+RMGDA +VFD M DVVVWN+MIRG C Sbjct: 124 LGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFC 183 Query: 415 KEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDATLVT 236 K G+++ G VF QM+ER+ VSWN+M+ LA++ ++ ALE+F +ML++GFE DDA+LVT Sbjct: 184 KMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVT 243 Query: 235 VLPVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMPKK 56 VLPVCARLGA ++G WIHSYA+S+G Q + VGNSL+DFY KCG+L+ AW F+ M K Sbjct: 244 VLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASK 303 Query: 55 SVVSWNTMISGLAYNGQG 2 +VVSWN MISGLAYNG+G Sbjct: 304 NVVSWNAMISGLAYNGEG 321 Score = 98.2 bits (243), Expect = 3e-18 Identities = 75/297 (25%), Positives = 140/297 (47%), Gaps = 10/297 (3%) Frame = -1 Query: 886 IHAHFIRHNLHQSNTLLAHFISICGKLRLMPYASLIFVHTQTPNILVFNSMIKGYSISGP 707 +HAH +R + ++ + + M AS +F + P+++V+N MI+G+ G Sbjct: 128 VHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGD 187 Query: 706 SKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTEVSFGRKVHGEIVRVGFELYNGVQIG 527 + ++++ MK R + + L K+ N E + ++ E++ GFE + Sbjct: 188 LETGMKVFGQMKERTVVSWNLMMSCLAKN--NKEEKAL--ELFNEMLEQGFEPDDA---S 240 Query: 526 LVEFYTSCKRMGDAKRVFDMMP--------VKDVV-VWNMMIRGSCKEGNVDMGFHVFQQ 374 LV C R+G A + + + ++D + V N ++ CK GN+ + +F Sbjct: 241 LVTVLPVCARLG-AVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFND 299 Query: 373 MRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDATLVTVLPVCARLGASELG 194 M ++ VSWN MI GLA +G V + +F++M+ GFE +D+T V VL CA +G + G Sbjct: 300 MASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRG 359 Query: 193 SWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMP-KKSVVSWNTMIS 26 + + + ++ ++D +CG + A MP K + W ++S Sbjct: 360 RDLFASMSVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALLS 416 >emb|CBI39579.3| unnamed protein product [Vitis vinifera] Length = 459 Score = 374 bits (961), Expect = e-101 Identities = 183/322 (56%), Positives = 232/322 (72%) Frame = -1 Query: 967 MRRDGREVERRILTLLHGHNTRTHLKQIHAHFIRHNLHQSNTLLAHFISICGKLRLMPYA 788 M R RE ERRIL LHG TRT L QIHAH +RH+LHQSN +L+HFIS+CG L M YA Sbjct: 1 MSRVCREAERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYA 60 Query: 787 SLIFVHTQTPNILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNV 608 +L+F TQ PN+L+FNSMIKGYS+ GPS+ L +++ MK R IWPD++TFAPLLKSC+ + Sbjct: 61 NLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGI 120 Query: 607 TEVSFGRKVHGEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVVVWNMMI 428 + G+ VHG ++ VGFE ++ ++IG+++ YTSC RM DAK+VFD M +D Sbjct: 121 CDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRD-------- 172 Query: 427 RGSCKEGNVDMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDA 248 MR+RS VSWN MI GL QSGRD ALE+F++M D GFE DDA Sbjct: 173 ------------------MRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDA 214 Query: 247 TLVTVLPVCARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDK 68 T+VT+LPVCARLGA ++G WIHSYA+S L + F+ VGNSL+DFY KCG LE AWR F++ Sbjct: 215 TVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNE 274 Query: 67 MPKKSVVSWNTMISGLAYNGQG 2 MP+K+VVSWN MISGL +NG+G Sbjct: 275 MPQKNVVSWNAMISGLTFNGKG 296 Score = 80.1 bits (196), Expect = 7e-13 Identities = 60/246 (24%), Positives = 108/246 (43%), Gaps = 2/246 (0%) Frame = -1 Query: 757 NILVFNSMIKGYSISGPSKRPLQIYTLMKCRDIWPDQYTFAPLLKSCTNVTEVSFGRKVH 578 +++ +NSMI G SG L+++ M PD T +L C + V G +H Sbjct: 177 SVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIH 236 Query: 577 GEIVRVGFELYNGVQIGLVEFYTSCKRMGDAKRVFDMMPVKDVV-VWNMMIRGSCKEGNV 401 Y R+ ++D + V N ++ CK G + Sbjct: 237 S--------------------YAESSRL-----------LRDFISVGNSLVDFYCKCGIL 265 Query: 400 DMGFHVFQQMRERSNVSWNIMIGGLAQSGRDVVALEVFKQMLDEGFELDDATLVTVLPVC 221 + + VF +M +++ VSWN MI GL +G+ + ++F++M+++G +DAT V VL C Sbjct: 266 ETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCC 325 Query: 220 ARLGASELGSWIHSYADSRGLFQKFVQVGNSLLDFYHKCGDLEMAWRTFDKMP-KKSVVS 44 A G E G + + + ++ ++D + G +E A MP + + V Sbjct: 326 AHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVL 385 Query: 43 WNTMIS 26 W +++S Sbjct: 386 WGSLLS 391