BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031246
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   106   2e-21
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   102   3e-20
gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]             102   3e-20
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   102   3e-20
emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]   102   3e-20

>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  106 bits (265), Expect = 2e-21
 Identities = 47/113 (41%), Positives = 71/113 (62%)
 Frame = +2

Query: 2   LGVPILISGKKSECFEYLIDKVQKKVAGWKTKIISQVGITVLIKTVAQVVPNYVMSTYKL 181
           LG+P  + G K++ F ++ D++Q ++ GW  K +S+ G  V+IK+VA  +P YVMS ++L
Sbjct: 535 LGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRL 594

Query: 182 PIKICDKLDKMARDFWWHGSTDSKAYHTLSWDKINTQKSMGGLGLRSARDMNS 340
           P  I  KL      FWW  + DS+  H ++WDK+ + KS GGLG R+  D NS
Sbjct: 595 PKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGGLGFRNVDDFNS 647


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  102 bits (255), Expect = 3e-20
 Identities = 40/106 (37%), Positives = 67/106 (63%)
 Frame = +2

Query: 2    LGVPILISGKKSECFEYLIDKVQKKVAGWKTKIISQVGITVLIKTVAQVVPNYVMSTYKL 181
            LG+P+ +   +++ F YL +++ +++ GWK K++S+ G  +LIK VAQV+P + M  ++L
Sbjct: 952  LGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFEL 1011

Query: 182  PIKICDKLDKMARDFWWHGSTDSKAYHTLSWDKINTQKSMGGLGLR 319
               +CD++ KM   +WW         H LSW+K+   K+MGGLG R
Sbjct: 1012 TKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFR 1057


>gb|AAF69169.1|AC007915_21 F27F5.21 [Arabidopsis thaliana]
          Length = 1023

 Score =  102 bits (255), Expect = 3e-20
 Identities = 45/113 (39%), Positives = 69/113 (61%)
 Frame = +2

Query: 2   LGVPILISGKKSECFEYLIDKVQKKVAGWKTKIISQVGITVLIKTVAQVVPNYVMSTYKL 181
           LG+P  + G K+  F ++ D++Q ++ GW  K +S+ G  V+IK+V  V+P YVMS ++L
Sbjct: 601 LGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCFRL 660

Query: 182 PIKICDKLDKMARDFWWHGSTDSKAYHTLSWDKINTQKSMGGLGLRSARDMNS 340
           P  I  KL      FWW    +S+  H ++W+K+ + K+ GGLG RS  D NS
Sbjct: 661 PKTITSKLTSAVAKFWWSSDGESRGMHWMAWNKLCSSKADGGLGFRSVNDFNS 713


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  102 bits (255), Expect = 3e-20
 Identities = 40/106 (37%), Positives = 67/106 (63%)
 Frame = +2

Query: 2    LGVPILISGKKSECFEYLIDKVQKKVAGWKTKIISQVGITVLIKTVAQVVPNYVMSTYKL 181
            LG+P+ +   +++ F YL +++ +++ GWK K++S+ G  +LIK VAQV+P + M  ++L
Sbjct: 948  LGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFEL 1007

Query: 182  PIKICDKLDKMARDFWWHGSTDSKAYHTLSWDKINTQKSMGGLGLR 319
               +CD++ KM   +WW         H LSW+K+   K+MGGLG R
Sbjct: 1008 TKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFR 1053


>emb|CAN77449.1| hypothetical protein VITISV_016970 [Vitis vinifera]
          Length = 517

 Score =  102 bits (254), Expect = 3e-20
 Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
 Frame = +2

Query: 2   LGVPILISGKKSECFEYLIDKVQKKVAGWKTKIISQVGITVLIKTVAQVVPNYVMSTYKL 181
           LG+  LI   K   F +L D++ +++ GW++K++SQ G  +LIK V Q +P+Y MST+ L
Sbjct: 152 LGLLSLIGKSKRVVFGFLRDRLWRRLQGWQSKLLSQAGKKILIKVVGQAIPSYCMSTFLL 211

Query: 182 PIKICDKLDKMARDFWWHGSTD-SKAYHTLSWDKINTQKSMGGLGLRSARDMN 337
           PI + ++L KM   FWW   +D  +  + LSWDK+  +K  GGLG R+ RD N
Sbjct: 212 PISLSEELQKMMNSFWWGPKSDGGRRINWLSWDKLCLRKEEGGLGFRNLRDFN 264