BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031229
         (377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    90   2e-16
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta...    87   1e-15
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...    87   2e-15
gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japo...    86   3e-15
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...    86   4e-15

>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/126 (37%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
 Frame = -1

Query: 377  LQQGDPLSPYLFILCSEVXXXXXXXXXXXXXLTGLKLSRQGCSLSHLMYVDDLLLFGKCD 198
            L+QGDPLSPYL+++C E                 +K SR G  +S+L + DDL+LF +  
Sbjct: 639  LRQGDPLSPYLYVICMERLAHLIDQEVTNGNWKPVKASRNGPPISNLAFADDLILFSEAS 698

Query: 197  LQQAHTLNAVIDKYCEFSGQQVNRSKSQ--FIHNKHLP*LFKNALSRILKVPSTTQFPNY 24
            ++QA  +   +D++CE SG +VN  KS+  F  N HL    ++A+   L + +T  F  Y
Sbjct: 699  VEQAQVMKWCLDRFCEASGSKVNEDKSKIYFSANTHLD--IRDAVCNTLAMEATADFGKY 756

Query: 23   LGVPSL 6
            LGVP++
Sbjct: 757  LGVPTI 762


>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1044

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 45/124 (36%), Positives = 68/124 (54%)
 Frame = -1

Query: 377 LQQGDPLSPYLFILCSEVXXXXXXXXXXXXXLTGLKLSRQGCSLSHLMYVDDLLLFGKCD 198
           L+QGDPLSP+LFI+CSEV             L GL++S+    ++HL++ DD + F + D
Sbjct: 459 LRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSD 518

Query: 197 LQQAHTLNAVIDKYCEFSGQQVNRSKSQFIHNKHLP*LFKNALSRILKVPSTTQFPNYLG 18
           L+   T   ++ KY E SGQ +N+SKS    ++  P   K    +IL +        YLG
Sbjct: 519 LKSCKTFLCILKKYEEASGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLG 578

Query: 17  VPSL 6
           +P +
Sbjct: 579 LPKM 582


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 45/125 (36%), Positives = 70/125 (56%)
 Frame = -1

Query: 377 LQQGDPLSPYLFILCSEVXXXXXXXXXXXXXLTGLKLSRQGCSLSHLMYVDDLLLFGKCD 198
           L+QGDPLSPYLFILC+E              L G+K+ ++  ++SHL++ DD  LF + +
Sbjct: 225 LRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRAN 284

Query: 197 LQQAHTLNAVIDKYCEFSGQQVNRSKSQFIHNKHLP*LFKNALSRILKVPSTTQFPNYLG 18
             +   L  ++D Y   S Q +N  KS+   ++++P   KN LS +L V        YLG
Sbjct: 285 ENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLG 344

Query: 17  VPSLL 3
           +PS++
Sbjct: 345 LPSMI 349


>gb|EEE55133.1| hypothetical protein OsJ_02920 [Oryza sativa Japonica Group]
          Length = 1049

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 41/123 (33%), Positives = 65/123 (52%)
 Frame = -1

Query: 377 LQQGDPLSPYLFILCSEVXXXXXXXXXXXXXLTGLKLSRQGCSLSHLMYVDDLLLFGKCD 198
           ++QGDP+SPYLF+LC+E              L G++   QG  +SHL++ DD + F K D
Sbjct: 372 IRQGDPVSPYLFLLCTEGLSCLLQRKESLGLLHGIRNGHQGPPISHLLFADDSIFFAKSD 431

Query: 197 LQQAHTLNAVIDKYCEFSGQQVNRSKSQFIHNKHLP*LFKNALSRILKVPSTTQFPNYLG 18
            +    L + +  YC  SGQ++N  KS  +  ++ P   K  +   L+V +      YLG
Sbjct: 432 PRSVQVLKSTLQSYCNASGQKINLQKSSLLFGRYCPDAIKTCVKDCLQVSNEALQDTYLG 491

Query: 17  VPS 9
           +P+
Sbjct: 492 MPT 494


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
            Japonica Group]
          Length = 1382

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 43/123 (34%), Positives = 64/123 (52%)
 Frame = -1

Query: 377  LQQGDPLSPYLFILCSEVXXXXXXXXXXXXXLTGLKLSRQGCSLSHLMYVDDLLLFGKCD 198
            ++QGDP+SPYLF+LC+E              L G+K  R G  +SHL++ DD + F K D
Sbjct: 648  IRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIKNGRHGPPISHLLFADDSIFFAKAD 707

Query: 197  LQQAHTLNAVIDKYCEFSGQQVNRSKSQFIHNKHLP*LFKNALSRILKVPSTTQFPNYLG 18
             +    L   +  YC  SGQ++N  KS     K  P   K ++   L+V +     +YLG
Sbjct: 708  SRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCPDAVKISVKSCLQVDNEVLQDSYLG 767

Query: 17   VPS 9
            +P+
Sbjct: 768  MPT 770