BLASTX nr result
ID: Coptis23_contig00031118
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00031118
(1819 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22452.3| unnamed protein product [Vitis vinifera] 630 e-178
ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis ... 612 e-173
ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycin... 593 e-167
ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumi... 580 e-163
ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula] gi|3... 568 e-159
>emb|CBI22452.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 630 bits (1625), Expect = e-178
Identities = 344/582 (59%), Positives = 427/582 (73%), Gaps = 17/582 (2%)
Frame = -3
Query: 1814 LSGKPMAVGCMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPPDFKKYTHCSELTR 1635
L G+PMAVG MSMISTANYEARKFGVRAAMPGFIARKLCPELIFVP DFKKYT+ S+LTR
Sbjct: 127 LRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTR 186
Query: 1634 KVFQKYDPNFIASSLDEAYLDISEVCKARGVSSEEVASELRAGVYQETGLTCSAGVAPNR 1455
KVFQKYDPNF+A+SLDEAYLDI+EVC R ++S E+A ELR V++ TGLTCSAGVAPNR
Sbjct: 187 KVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNR 246
Query: 1454 MIAKVCSDINKPNGHFVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILRDVLGISTCEEI 1275
++AKVCSDINKPNG FVLP++RMAVMTF+SSLPIRKIGGIGKVTEHIL V GI+TCEE+
Sbjct: 247 LLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEM 306
Query: 1274 LRKSAYLYALFSHPSIDFFLSVGLGLGKTDTPQFRYRKSISSERTFSATEDEASLHNKLA 1095
L+K +L ALFS S DFFLSVGLGLGKTDTPQ R+RKSIS+ERTFSAT+D A L+ KLA
Sbjct: 307 LQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLA 366
Query: 1094 DIAESLSTDMQKQGLCGRTLTLKLKTATFEVRTRAVSLQKYIYTSGDILHHASKLLNAEL 915
+++E LS DMQK+GL GRTLTLKLKTA+FEVR+RAV++QKYI + DIL+HA KLLNAEL
Sbjct: 367 ELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAEL 426
Query: 914 PLSLRLIGLRMSHFDDDKLS--PDVTQKKLTSFIVTGNATAKVESNDSLMXXXXXXSHTI 741
PLSLRLIGLR+SHF++DK D TQK L +FI++G+A+ K SL+ SH +
Sbjct: 427 PLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFM 486
Query: 740 TDAEMGVPINAYRS--FVSDDYSDSPNFEQLSNSEHRSVLPSNGAGEMEKPDLMSTNGGL 567
D E + I+ + + +VS+D DS LS+ +H + SN +G+++ + + NG +
Sbjct: 487 VDPENDLSIDNHETCHYVSEDLLDS---NLLSDLDHCNFNLSNNSGKIDNNNELPLNGSV 543
Query: 566 NKVAGHELTAYVTPSKE-----TVDMESFLFSGQSVAHSVEGLNYRDNILHKKAQLSSSE 402
KV + S + V+ +SF FS Q ++ + +N L SS++
Sbjct: 544 AKVNAPNVVGCAPKSHQIKVSHLVEADSFSFSEQCESNRPDRARRTNNDLDDGVP-SSNQ 602
Query: 401 KDHSLWVDDYKCSLCGAELPPGFVEERQEHSDYHFAEMLQMEESQHN-----SRHFRQR- 240
K+ LWV+DYKCSLCG ELPP FVEERQEH D+H AE LQ EES ++ ++ F QR
Sbjct: 603 KEQFLWVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESDNSRNLMLNQRFSQRD 662
Query: 239 --SNQKTQINNXXXXXXXXXXXXKDGKHLPIDLFFVKSNQNF 120
++Q+ + K+ KHLPID+FFVKSNQNF
Sbjct: 663 HTASQRRHKRHKSSKKEGSKSSQKESKHLPIDMFFVKSNQNF 704
>ref|XP_002264518.1| PREDICTED: DNA polymerase kappa-like [Vitis vinifera]
Length = 661
Score = 612 bits (1579), Expect = e-173
Identities = 337/569 (59%), Positives = 411/569 (72%), Gaps = 4/569 (0%)
Frame = -3
Query: 1814 LSGKPMAVGCMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPPDFKKYTHCSELTR 1635
L G+PMAVG MSMISTANYEARKFGVRAAMPGFIARKLCPELIFVP DFKKYT+ S+LTR
Sbjct: 127 LRGRPMAVGGMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTR 186
Query: 1634 KVFQKYDPNFIASSLDEAYLDISEVCKARGVSSEEVASELRAGVYQETGLTCSAGVAPNR 1455
KVFQKYDPNF+A+SLDEAYLDI+EVC R ++S E+A ELR V++ TGLTCSAGVAPNR
Sbjct: 187 KVFQKYDPNFMAASLDEAYLDITEVCNERDLTSGEIAEELRTSVHEVTGLTCSAGVAPNR 246
Query: 1454 MIAKVCSDINKPNGHFVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILRDVLGISTCEEI 1275
++AKVCSDINKPNG FVLP++RMAVMTF+SSLPIRKIGGIGKVTEHIL V GI+TCEE+
Sbjct: 247 LLAKVCSDINKPNGQFVLPSNRMAVMTFISSLPIRKIGGIGKVTEHILSGVFGINTCEEM 306
Query: 1274 LRKSAYLYALFSHPSIDFFLSVGLGLGKTDTPQFRYRKSISSERTFSATEDEASLHNKLA 1095
L+K +L ALFS S DFFLSVGLGLGKTDTPQ R+RKSIS+ERTFSAT+D A L+ KLA
Sbjct: 307 LQKGGFLCALFSRSSADFFLSVGLGLGKTDTPQVRFRKSISNERTFSATDDTALLYQKLA 366
Query: 1094 DIAESLSTDMQKQGLCGRTLTLKLKTATFEVRTRAVSLQKYIYTSGDILHHASKLLNAEL 915
+++E LS DMQK+GL GRTLTLKLKTA+FEVR+RAV++QKYI + DIL+HA KLLNAEL
Sbjct: 367 ELSEMLSIDMQKEGLSGRTLTLKLKTASFEVRSRAVTMQKYICSREDILNHALKLLNAEL 426
Query: 914 PLSLRLIGLRMSHFDDDKLS--PDVTQKKLTSFIVTGNATAKVESNDSLMXXXXXXSHTI 741
PLSLRLIGLR+SHF++DK D TQK L +FI++G+A+ K SL+ SH +
Sbjct: 427 PLSLRLIGLRISHFNEDKDGHLSDPTQKTLANFIISGDASGKNVCEHSLLGSDTSDSHFM 486
Query: 740 TDAEMGVPINAYRS--FVSDDYSDSPNFEQLSNSEHRSVLPSNGAGEMEKPDLMSTNGGL 567
D E + I+ + + +VS+D DS LS+ +H + SN +G+++ + + NG +
Sbjct: 487 VDPENDLSIDNHETCHYVSEDLLDS---NLLSDLDHCNFNLSNNSGKIDNNNELPLNGSV 543
Query: 566 NKVAGHELTAYVTPSKETVDMESFLFSGQSVAHSVEGLNYRDNILHKKAQLSSSEKDHSL 387
K + P + R N SS++K+ L
Sbjct: 544 AKCESNR------PDRAR----------------------RTNNDLDDGVPSSNQKEQFL 575
Query: 386 WVDDYKCSLCGAELPPGFVEERQEHSDYHFAEMLQMEESQHNSRHFRQRSNQKTQINNXX 207
WV+DYKCSLCG ELPP FVEERQEH D+H AE LQ EES NSR+ ++Q+ +
Sbjct: 576 WVNDYKCSLCGIELPPNFVEERQEHFDFHLAEKLQKEESD-NSRNL--TASQRRHKRHKS 632
Query: 206 XXXXXXXXXXKDGKHLPIDLFFVKSNQNF 120
K+ KHLPID+FFVKSNQNF
Sbjct: 633 SKKEGSKSSQKESKHLPIDMFFVKSNQNF 661
>ref|XP_003538172.1| PREDICTED: DNA polymerase kappa-like [Glycine max]
Length = 663
Score = 593 bits (1529), Expect = e-167
Identities = 331/569 (58%), Positives = 404/569 (71%), Gaps = 9/569 (1%)
Frame = -3
Query: 1814 LSGKPMAVGCMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPPDFKKYTHCSELTR 1635
L GKPMAVG MSM+STANYEARKFGVRAAMPGFIARKLCPELIFVP DFKKYT+ S+LTR
Sbjct: 122 LKGKPMAVGSMSMLSTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTR 181
Query: 1634 KVFQKYDPNFIASSLDEAYLDISEVCKARGVSSEEVASELRAGVYQETGLTCSAGVAPNR 1455
KVF +YDPNFIA SLDEAYLDI+EVC+ R V SEE+A ELRAGVY+ETGLTCSAGVAPNR
Sbjct: 182 KVFGRYDPNFIAGSLDEAYLDITEVCRERNVKSEEIAQELRAGVYEETGLTCSAGVAPNR 241
Query: 1454 MIAKVCSDINKPNGHFVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILRDVLGISTCEEI 1275
++AKVCSDINKPNG +VLPNDRMAVMTFVSSLPIRKIGGIGKVTEHIL+ V GI+TCE++
Sbjct: 242 LLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFGINTCEQM 301
Query: 1274 LRKSAYLYALFSHPSIDFFLSVGLGLGKTDTPQFRYRKSISSERTFSATEDEASLHNKLA 1095
L KS+Y+ A FS + DFF SVGLGLG+TD+PQ R+RKSISSERTFSAT+DE LH KL
Sbjct: 302 LEKSSYICAFFSQSTADFFCSVGLGLGQTDSPQVRFRKSISSERTFSATKDEVLLHKKLE 361
Query: 1094 DIAESLSTDMQKQGLCGRTLTLKLKTATFEVRTRAVSLQKYIYTSGDILHHASKLLNAEL 915
++AE LS DMQK+GL GRTLTLKLKTA+FEVRTRAV+LQKYI +S DIL HA KLL AEL
Sbjct: 362 ELAEMLSADMQKEGLSGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLQAEL 421
Query: 914 PLSLRLIGLRMSHFDDDKLS--PDVTQKKLTSFIVTGNATAKVESNDSLMXXXXXXSHTI 741
P+S+RLIGLR+S F+ DK S D TQK +T+FI +G+ S + +
Sbjct: 422 PISVRLIGLRVSQFNGDKCSAKSDPTQKTITNFITSGDVNRNCSSFPDVADHDF-----V 476
Query: 740 TDAEMGVPINAYRSFVSDDYSDSPNFEQLSNSEHRS--VLPSNGAGEMEKPDLMSTN--- 576
++AE + I++ R D+ D + LS+ +++S V S+G E++ +T+
Sbjct: 477 SNAETDMSIDS-RQTGQLDWRDPFDGNYLSDVDYQSCTVQKSDGVEEVQTSSNDATSSHY 535
Query: 575 GGLNKVAGHELTAYVTPSKETVDMESFLFSGQSVAHSVEGLNYRD--NILHKKAQLSSSE 402
GL +V G T+Y+ GQ VEG+N ++ N+L + S +
Sbjct: 536 SGLTEVLGS--TSYL---------------GQ-----VEGINVKNGSNLLEDERLDSCCQ 573
Query: 401 KDHSLWVDDYKCSLCGAELPPGFVEERQEHSDYHFAEMLQMEESQHNSRHFRQRSNQKTQ 222
+ LW++DYKCSLCG ELPP FVEER EHSD+H AE LQ EES + + +S +
Sbjct: 574 EKTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESSIHQKSVPSQSKGQKD 633
Query: 221 INNXXXXXXXXXXXXKDGKHLPIDLFFVK 135
K+G + PID FFVK
Sbjct: 634 GVTRQSKSKKQKLSQKEGSYTPIDYFFVK 662
>ref|XP_004137085.1| PREDICTED: DNA polymerase kappa-like [Cucumis sativus]
gi|449495765|ref|XP_004159938.1| PREDICTED: DNA
polymerase kappa-like [Cucumis sativus]
Length = 693
Score = 580 bits (1494), Expect = e-163
Identities = 312/574 (54%), Positives = 406/574 (70%), Gaps = 8/574 (1%)
Frame = -3
Query: 1817 LLSGKPMAVGCMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPPDFKKYTHCSELT 1638
LL GKPMAVG MSM+STANYEARK+GVRAAMPGFIAR+LCPELI VP +F KY + S+LT
Sbjct: 122 LLKGKPMAVGSMSMLSTANYEARKYGVRAAMPGFIARRLCPELILVPTNFDKYNYYSDLT 181
Query: 1637 RKVFQKYDPNFIASSLDEAYLDISEVCKARGVSSEEVASELRAGVYQETGLTCSAGVAPN 1458
RKVF +YDPNF+A+SLDEAYLDI+EVCK RG++SEE+A +LR +++ETGLTCSAGVA N
Sbjct: 182 RKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAKDLRTSIFEETGLTCSAGVAAN 241
Query: 1457 RMIAKVCSDINKPNGHFVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILRDVLGISTCEE 1278
R++AKVCSDINKPNG F+LPNDR A++TF+SSLPIRKIGGIGKVTEHIL+D LGI+TCEE
Sbjct: 242 RLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKDALGINTCEE 301
Query: 1277 ILRKSAYLYALFSHPSIDFFLSVGLGLGKTDTPQFRYRKSISSERTFSATEDEASLHNKL 1098
+L+K +L ALFS S DFFLSVGLGLG TDTPQ R+RKSIS+ERTF+AT DE + KL
Sbjct: 302 MLQKGGHLCALFSQSSADFFLSVGLGLGSTDTPQVRFRKSISNERTFAATTDERLIFQKL 361
Query: 1097 ADIAESLSTDMQKQGLCGRTLTLKLKTATFEVRTRAVSLQKYIYTSGDILHHASKLLNAE 918
AD+AE LS DM+K+GL GRTLTLKLKTA+FEVRTRAV+LQKYI +S DIL AS+LL AE
Sbjct: 362 ADLAEMLSMDMEKEGLTGRTLTLKLKTASFEVRTRAVTLQKYICSSSDILQQASRLLKAE 421
Query: 917 LPLSLRLIGLRMSHFDDDKLSP--DVTQKKLTSFIVTGNATAKVESNDSLMXXXXXXSHT 744
LP+SLRLIGLR+S F++D + D TQ +T FI +G+AT K + +
Sbjct: 422 LPVSLRLIGLRISQFNEDGATAGLDPTQISITRFITSGDATRKSTGDCCSLNTDSNNHGF 481
Query: 743 ITDAEMGVPINAY--RSFVSDDYSDSPNFEQLSNSEHRSVLPSNGAGEMEKPDLMSTNGG 570
+ D E+ I+ Y S S+ + SN + + +N A + E+P+ + N
Sbjct: 482 MDDTEIDTCIDGYGTDSETHHQVSNQRIDNKFSNMDDSNCTSTNDAEKSEEPENLLRNAS 541
Query: 569 LNKVAGHELTAYVTPSKETVDMESFLFSGQSVAHSVEGLNYRDNI-LHKKAQLSSSEKDH 393
++ + S + + + + S + ++EG N +N+ + ++ S + +
Sbjct: 542 ADQANISTAIGSTSDSSDAL-IRRVSSTACSSSRNLEG-NPNNNVDGENQVEVRSPDNNG 599
Query: 392 SL-WVDDYKCSLCGAELPPGFVEERQEHSDYHFAEMLQMEESQHNSRHF--RQRSNQKTQ 222
+ W+D+YKC++CGAE+P FV+ERQEH D+H AE LQ EES SR RQR+ K
Sbjct: 600 QIWWIDNYKCTICGAEVPASFVDERQEHIDFHIAEKLQEEESGIRSRTHMPRQRTADKNL 659
Query: 221 INNXXXXXXXXXXXXKDGKHLPIDLFFVKSNQNF 120
+++ K+ KH+PIDLFF+K+NQ F
Sbjct: 660 LSSPRKPKRQKSTPEKEVKHIPIDLFFMKTNQKF 693
>ref|XP_003610613.1| DNA polymerase IV [Medicago truncatula] gi|355511948|gb|AES93571.1|
DNA polymerase IV [Medicago truncatula]
Length = 706
Score = 568 bits (1465), Expect = e-159
Identities = 328/606 (54%), Positives = 394/606 (65%), Gaps = 36/606 (5%)
Frame = -3
Query: 1817 LLSGKPMAVGCMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPPDFKKYTHCSELT 1638
+L G PMAVG MSMISTANYEARKFGVR+AMPGFIARKLCPELIFVP DFKKYTH S+LT
Sbjct: 119 MLKGMPMAVGSMSMISTANYEARKFGVRSAMPGFIARKLCPELIFVPVDFKKYTHYSDLT 178
Query: 1637 RK----------------------------VFQKYDPNFIASSLDEAYLDISEVCKARGV 1542
RK VFQ+YDPNFIA SLDEAYLDI+EVC+ R V
Sbjct: 179 RKGIIFCVTDFYIVVFPLITDGSLKCTCSLVFQRYDPNFIAGSLDEAYLDITEVCRERNV 238
Query: 1541 SSEEVASELRAGVYQETGLTCSAGVAPNRMIAKVCSDINKPNGHFVLPNDRMAVMTFVSS 1362
SEE+A E+R GV +ETGLTCSAGVAPNR++AKVCSDINKPNG +VLPNDR+AVMTF+SS
Sbjct: 239 KSEEIAQEIRVGVLEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRLAVMTFISS 298
Query: 1361 LPIRKIGGIGKVTEHILRDVLGISTCEEILRKSAYLYALFSHPSIDFFLSVGLGLGKTDT 1182
LPIRKIGGIGKVTE IL++V GISTCE++L K +YL ALFS + DFF SVGLGLGKTD+
Sbjct: 299 LPIRKIGGIGKVTERILKEVFGISTCEQMLDKGSYLSALFSQSTADFFYSVGLGLGKTDS 358
Query: 1181 PQFRYRKSISSERTFSATEDEASLHNKLADIAESLSTDMQKQGLCGRTLTLKLKTATFEV 1002
PQ R+RKSIS+ERTFSA+EDEA LH KLA++AE LSTDMQK+GL GRTLTLKLKTA+FEV
Sbjct: 359 PQVRFRKSISNERTFSASEDEALLHKKLAELAEMLSTDMQKEGLHGRTLTLKLKTASFEV 418
Query: 1001 RTRAVSLQKYIYTSGDILHHASKLLNAELPLSLRLIGLRMSHFDDDK--LSPDVTQKKLT 828
R RAV+LQ YI +S DIL HASKLL AELP+S+RLIGLR+S F K +PD TQK +T
Sbjct: 419 RNRAVTLQNYINSSDDILKHASKLLKAELPVSVRLIGLRVSQFSGQKCGATPDPTQKTIT 478
Query: 827 SFIVTGNATAKVESNDSLMXXXXXXSHTITDAEMGVPINAYRSFVSDDYSDSPNFEQLSN 648
+FI +G A K S + +TD E + ++ + D L
Sbjct: 479 NFITSGEANRKNSSFSDVTDHDF-----VTDTETDLSLDGRHTGQLDSRDPFDGDHSLDV 533
Query: 647 SEHRSVLPSNGAGE----MEKPDLMSTNGGLNKVAGHELTAYVTPSKETVDMESFLFSGQ 480
+ S L E + D S + G KV G S F G+
Sbjct: 534 NYQSSTLRKTAGAEKVRTSDNADASSNHSGCTKVLG----------------GSTSFQGK 577
Query: 479 SVAHSVEGLNYRDNILHKKAQLSSSEKDHSLWVDDYKCSLCGAELPPGFVEERQEHSDYH 300
+V N N+L + + +S ++ LW+DDYKCSLCGAELPP FVEER EHSD+H
Sbjct: 578 FEGKNV---NNGSNLL-EDDRPNSCQEMIMLWLDDYKCSLCGAELPPSFVEERLEHSDFH 633
Query: 299 FAEMLQMEESQ-HNSRHFRQRSNQKTQINNXXXXXXXXXXXXKDGKHLPIDLFFVKSNQN 123
FAE+LQ EES H + QR I+ + P+ +F ++S+Q+
Sbjct: 634 FAELLQKEESSIHQASVPIQRVRSTESIDKANPRSKSCLTRRASIR--PLIIFLLESSQS 691
Query: 122 F*C-CS 108
C CS
Sbjct: 692 LRCWCS 697