BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031057
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat...    91   8e-17
ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat...    91   8e-17
ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat...    89   3e-16
ref|XP_002515231.1| pentatricopeptide repeat-containing protein,...    86   3e-15

>ref|XP_002310039.1| predicted protein [Populus trichocarpa] gi|222852942|gb|EEE90489.1|
           predicted protein [Populus trichocarpa]
          Length = 507

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 53/99 (53%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
 Frame = +3

Query: 24  LKSYFLESQKIYNPQTFNSITHFFSTLDTPKNEEEKDIET--IFHIVNRSESTQNLKDSL 197
           LKS   E QK  +    +S   F S    P+N   KDI+   I++I++ S S+QNLK SL
Sbjct: 6   LKSLSFELQK--SRYVSSSKIPFLSLHTNPQNHNNKDIQVDAIYNIISNSTSSQNLKQSL 63

Query: 198 KSTQIYLSNSLIDGVLKRVRFSHANPLQVLDFFNYTAKK 314
           KST ++LSN LID VLKRVRFSH NPLQ LDFFN+TA +
Sbjct: 64  KSTGVFLSNDLIDKVLKRVRFSHGNPLQALDFFNFTADR 102


>ref|XP_004163923.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
 Frame = +3

Query: 15  MILLKSYFLESQKIYNPQTFNSI--THFFSTLDTPKNEEEKDIETIFHIVNRSESTQNLK 188
           MIL +  F +S   Y      SI  +H FS+  T      ++IET+F I+  S S+ ++K
Sbjct: 1   MILRRPNFFQSPLRYFSPIPLSIFYSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMK 59

Query: 189 DSLKSTQIYLSNSLIDGVLKRVRFSHANPLQVLDFFNYTAKK 314
            SL+S++++LSN LIDGVLKRVRFSH NPLQ L+FFNYTAK+
Sbjct: 60  HSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKR 101


>ref|XP_004150840.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Cucumis sativus]
          Length = 495

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 51/102 (50%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
 Frame = +3

Query: 15  MILLKSYFLESQKIYNPQTFNSI--THFFSTLDTPKNEEEKDIETIFHIVNRSESTQNLK 188
           MIL +  F +S   Y      SI  +H FS+  T      ++IET+F I+  S S+ ++K
Sbjct: 1   MILRRPNFFQSPLRYFSPIPLSIFFSHPFSS-STDNQSLHQNIETVFRIITTSSSSTDMK 59

Query: 189 DSLKSTQIYLSNSLIDGVLKRVRFSHANPLQVLDFFNYTAKK 314
            SL+S++++LSN LIDGVLKRVRFSH NPLQ L+FFNYTAK+
Sbjct: 60  HSLESSRVFLSNELIDGVLKRVRFSHGNPLQALEFFNYTAKR 101


>ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 13/113 (11%)
 Frame = +3

Query: 15  MILLKSYFLESQKIY-----------NPQTFNSITH--FFSTLDTPKNEEEKDIETIFHI 155
           M++LK   L+S   Y           NPQ  +S+    ++S        +  D+ET+F I
Sbjct: 7   MMILKPLSLQSSSRYAPSISTIGLNSNPQNPSSVFSRLYWSETIAETTVDNGDVETVFRI 66

Query: 156 VNRSESTQNLKDSLKSTQIYLSNSLIDGVLKRVRFSHANPLQVLDFFNYTAKK 314
           V+ + ST+NLK SLKS+ ++LSN LID VLKRVRFSH NP Q L FFNYT K+
Sbjct: 67  VSSASSTRNLKQSLKSSGVFLSNDLIDKVLKRVRFSHGNPFQALAFFNYTNKR 119


>ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545711|gb|EEF47215.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 505

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 50/98 (51%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
 Frame = +3

Query: 18  ILLKSYFLESQKIYNPQTFNSITH--FFSTLDTPKNEEEKDIETIFHIVNRSESTQNLKD 191
           ++LK     S   Y  +T  S+    FFST  T  N+   D+E ++ I+  S S QNLK 
Sbjct: 1   MILKPLLFPSNSRYISKTPISLLANLFFSTNPTSLND---DVEVVYRIITSSSSVQNLKQ 57

Query: 192 SLKSTQIYLSNSLIDGVLKRVRFSHANPLQVLDFFNYT 305
           SL ST I+LSN LID VLKRVRFSH NPLQ L+FF YT
Sbjct: 58  SLTSTGIFLSNDLIDKVLKRVRFSHGNPLQALEFFYYT 95