BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031039
         (798 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi...   325   7e-87
emb|CBI25851.3| unnamed protein product [Vitis vinifera]              325   7e-87
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,...   313   3e-83
ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containi...   298   9e-79
ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2...   289   6e-76

>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score =  325 bits (833), Expect = 7e-87
 Identities = 162/268 (60%), Positives = 198/268 (73%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 618
           YR EG +V VK F V+L+L REAKLA+EAL + +KM EF  R DT ++N VIR+FCEKGD
Sbjct: 116 YRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGD 175

Query: 617 MDVVLVLMKEMALIGIYPDMITYIVSIKGFCEVGRLEDACGLVKVMRDQGCVPNVVAYSA 438
           MD+   LMKEM LI +YP+MITY+  IKGFC VGRLEDAC L KVM+  GC PNVV Y+ 
Sbjct: 176 MDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTV 235

Query: 437 LLDGFCKIGDFNKALELLGEMENGG---MPNVVTYTSLIHNFCDNGRTVEALAVLDRMGS 267
           +LDG C+ G   +ALELLGEME       PNVVTYTS+I + C+ G+ +EAL +LDRM +
Sbjct: 236 ILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRA 295

Query: 266 RGCFPDRVTISILIKRLCSDDNIEEAHKLIVKVVANGNVSRNECYSCLVVSLLRNKNMNE 87
            GC P+RVT+SIL+K  C++  +EEA KLI KVVA GNVS  ECYS L+VSL+ NKN+ E
Sbjct: 296 CGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQE 355

Query: 86  ANELFRWMLKNQIMPDGLASSILIKQLC 3
           A +LFR ML N + PDGLA   LIK LC
Sbjct: 356 AEKLFRRMLANAVKPDGLACGTLIKALC 383


>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score =  325 bits (833), Expect = 7e-87
 Identities = 162/268 (60%), Positives = 198/268 (73%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 618
           YR EG +V VK F V+L+L REAKLA+EAL + +KM EF  R DT ++N VIR+FCEKGD
Sbjct: 122 YRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGD 181

Query: 617 MDVVLVLMKEMALIGIYPDMITYIVSIKGFCEVGRLEDACGLVKVMRDQGCVPNVVAYSA 438
           MD+   LMKEM LI +YP+MITY+  IKGFC VGRLEDAC L KVM+  GC PNVV Y+ 
Sbjct: 182 MDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTV 241

Query: 437 LLDGFCKIGDFNKALELLGEMENGG---MPNVVTYTSLIHNFCDNGRTVEALAVLDRMGS 267
           +LDG C+ G   +ALELLGEME       PNVVTYTS+I + C+ G+ +EAL +LDRM +
Sbjct: 242 ILDGVCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRA 301

Query: 266 RGCFPDRVTISILIKRLCSDDNIEEAHKLIVKVVANGNVSRNECYSCLVVSLLRNKNMNE 87
            GC P+RVT+SIL+K  C++  +EEA KLI KVVA GNVS  ECYS L+VSL+ NKN+ E
Sbjct: 302 CGCAPNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQE 361

Query: 86  ANELFRWMLKNQIMPDGLASSILIKQLC 3
           A +LFR ML N + PDGLA   LIK LC
Sbjct: 362 AEKLFRRMLANAVKPDGLACGTLIKALC 389


>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score =  313 bits (802), Expect = 3e-83
 Identities = 154/268 (57%), Positives = 200/268 (74%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 618
           YR E C+V +K FKV+LNLC+E  LANEA  V RKM+EF  + DT ++ IVIR+FC+KGD
Sbjct: 119 YRAEKCVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGD 178

Query: 617 MDVVLVLMKEMALIGIYPDMITYIVSIKGFCEVGRLEDACGLVKVMRDQGCVPNVVAYSA 438
           MD+   LM EM+   +YPDM+TY+  IKGFC++GRLE+AC LVK MR  GCVPNVV YS 
Sbjct: 179 MDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYST 238

Query: 437 LLDGFCKIGDFNKALELLGEMENGG---MPNVVTYTSLIHNFCDNGRTVEALAVLDRMGS 267
           L+DG C+ G   +ALELLG ME  G    PNV+TYTS+I   C+ GRT++A AVLDRM +
Sbjct: 239 LVDGICRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEA 298

Query: 266 RGCFPDRVTISILIKRLCSDDNIEEAHKLIVKVVANGNVSRNECYSCLVVSLLRNKNMNE 87
            GC P+RVT+S L+KRLC D ++EEA+KLI +VVA G+VS  +CYS +VV L+R K + E
Sbjct: 299 CGCAPNRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSPIVVCLIRIKKVEE 358

Query: 86  ANELFRWMLKNQIMPDGLASSILIKQLC 3
           A +LFR  + + + PDGLA S++IK+LC
Sbjct: 359 AEKLFRRAVVSGVKPDGLACSLMIKELC 386


>ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
           gi|449505643|ref|XP_004162530.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g47360-like [Cucumis sativus]
          Length = 475

 Score =  298 bits (763), Expect = 9e-79
 Identities = 146/268 (54%), Positives = 195/268 (72%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 618
           YR+EGCLV ++MFK+ILNLC+EAKLA EAL + RKM EF  R DTT +N+VIR+F EKG+
Sbjct: 120 YRREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGE 179

Query: 617 MDVVLVLMKEMALIGIYPDMITYIVSIKGFCEVGRLEDACGLVKVMRDQGCVPNVVAYSA 438
           MD  + LMKEM  + I+P+MITYI  +KGFC+VGR EDA GL K M++ GC PN V YS 
Sbjct: 180 MDKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSV 239

Query: 437 LLDGFCKIGDFNKALELLGEMENGG---MPNVVTYTSLIHNFCDNGRTVEALAVLDRMGS 267
           L++G  ++   ++ +E+L EME  G    PN VTYTS+I + C+ G  +EAL VLDRM  
Sbjct: 240 LVNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEE 299

Query: 266 RGCFPDRVTISILIKRLCSDDNIEEAHKLIVKVVANGNVSRNECYSCLVVSLLRNKNMNE 87
            G  P+RV +S L+K  C D ++EEA+KLI +VVA G VS  +CYS LVV+L++ K + E
Sbjct: 300 YGYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSSLVVTLVKMKKIAE 359

Query: 86  ANELFRWMLKNQIMPDGLASSILIKQLC 3
           A +LFR ML N + PDG+A S++I++LC
Sbjct: 360 AEKLFRNMLANGVKPDGVACSLMIRELC 387


>ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  289 bits (739), Expect = 6e-76
 Identities = 142/268 (52%), Positives = 189/268 (70%), Gaps = 3/268 (1%)
 Frame = -2

Query: 797 YRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGD 618
           Y+ E C+VCV  FKV+L LC+   LA+EAL V +KM EF  RPDTT++N+VIR  CEKGD
Sbjct: 121 YKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGD 180

Query: 617 MDVVLVLMKEMALIGIYPDMITYIVSIKGFCEVGRLEDACGLVKVMRDQGCVPNVVAYSA 438
           +D+   LM EM LI +YPDMITY+  IKGFC+VGRLE+A  L  VM   GC PNVVAYSA
Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSA 240

Query: 437 LLDGFCKIGDFNKALELLGEMENGG---MPNVVTYTSLIHNFCDNGRTVEALAVLDRMGS 267
           LLDG C+ G   +A ELL EME  G    PNV+TYTS+I +FC+ GRT +AL+VL+ M  
Sbjct: 241 LLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEV 300

Query: 266 RGCFPDRVTISILIKRLCSDDNIEEAHKLIVKVVANGNVSRNECYSCLVVSLLRNKNMNE 87
           RGC P+RVT S  I  +C++  +++ +  I ++VA G+VS  +CYS LVV L++ K + E
Sbjct: 301 RGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIKKVEE 360

Query: 86  ANELFRWMLKNQIMPDGLASSILIKQLC 3
           A + FR  L + + PD LA S++I+++C
Sbjct: 361 AEKTFRRALSSGMKPDSLACSMMIREIC 388