BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00031022
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN76635.1| hypothetical protein VITISV_010657 [Vitis vinifera]   255   3e-66
gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]    242   3e-62
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             234   8e-60
gb|ABM55238.1| integrase [Beta vulgaris]                              233   2e-59
gb|ABH08430.1| putative integrase [Beta vulgaris]                     233   2e-59

>emb|CAN76635.1| hypothetical protein VITISV_010657 [Vitis vinifera]
          Length = 611

 Score =  255 bits (652), Expect = 3e-66
 Identities = 122/184 (66%), Positives = 158/184 (85%)
 Frame = -3

Query: 553 VDKTLFLKKIKGDVLIAQIYVDDIVFGSTCESRALSFADIMSSEFEMSMVGELSYFLGLQ 374
           VD+TLF+K+   ++L+AQIYVD+IVFG+T  + ALSF + M +EF+ SMVGEL++FLGLQ
Sbjct: 362 VDRTLFIKRPNDELLVAQIYVDNIVFGATSSNIALSFVEEMKTEFKKSMVGELTFFLGLQ 421

Query: 373 VRQMDKGIFISQSKYAKDLVKKFGLDSAKLARTPMSTTTKLSKDSSGKDVDQKLYRSIIG 194
           +RQ++  IF+SQS YA+++VKKFGL+S+K +RTPMSTTTKL KD+SGKDV+QKLYRS+IG
Sbjct: 422 IRQLEDAIFLSQSNYAREVVKKFGLESSKHSRTPMSTTTKLGKDASGKDVEQKLYRSMIG 481

Query: 193 SLLYLTASRPDIAFSVGACARYQAKPKESHLVAVKRIIRYVFGTLDYGLWYPIETNSGIA 14
           SLLYLTAS PDI+FSVGAC +YQA PK+SHL+ +KRIIRY+  TL+YGLWYP ++   I 
Sbjct: 482 SLLYLTASHPDISFSVGACVKYQANPKKSHLMYIKRIIRYINETLNYGLWYPYDSYLVIV 541

Query: 13  GYSD 2
           GYSD
Sbjct: 542 GYSD 545


>gb|ABN08974.1| gag-pol polyprotein, putative [Medicago truncatula]
          Length = 469

 Score =  242 bits (618), Expect = 3e-62
 Identities = 123/191 (64%), Positives = 144/191 (75%)
 Frame = -3

Query: 574 KGFS*GSVDKTLFLKKIKGDVLIAQIYVDDIVFGSTCESRALSFADIMSSEFEMSMVGEL 395
           +G+  G  DKTLF+KK  G V+IAQIYVDDIVFG         F   M SEFEMS+VGEL
Sbjct: 152 QGYKKGGTDKTLFVKKEHGGVMIAQIYVDDIVFGGMSNQMVQHFVQQMQSEFEMSLVGEL 211

Query: 394 SYFLGLQVRQMDKGIFISQSKYAKDLVKKFGLDSAKLARTPMSTTTKLSKDSSGKDVDQK 215
           +YFLGLQ+RQM+  IFISQSKYAK++V+KFGLD+A   RTP +T  KLSKD +G  VDQ 
Sbjct: 212 TYFLGLQIRQMEDTIFISQSKYAKNIVRKFGLDNASHKRTPTATHLKLSKDENGVAVDQS 271

Query: 214 LYRSIIGSLLYLTASRPDIAFSVGACARYQAKPKESHLVAVKRIIRYVFGTLDYGLWYPI 35
           LYRS+IGSLLYLTASRPDI F+VG CARYQA+PK SHL  VKRI++YV GT DYG+ Y  
Sbjct: 272 LYRSMIGSLLYLTASRPDITFAVGVCARYQAEPKMSHLAQVKRILKYVNGTTDYGVLYSH 331

Query: 34  ETNSGIAGYSD 2
             NS + GY D
Sbjct: 332 SNNSQLIGYCD 342


>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  234 bits (597), Expect = 8e-60
 Identities = 118/191 (61%), Positives = 147/191 (76%)
 Frame = -3

Query: 574  KGFS*GSVDKTLFLKKIKGDVLIAQIYVDDIVFGSTCESRALSFADIMSSEFEMSMVGEL 395
            +G++ GSVDKTLF+K     ++I QIYVDDIVFG T +    +F   M++EF MSMVGEL
Sbjct: 1304 QGYTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGEL 1363

Query: 394  SYFLGLQVRQMDKGIFISQSKYAKDLVKKFGLDSAKLARTPMSTTTKLSKDSSGKDVDQK 215
             YFLGLQ+ Q D+GI ISQS YA++LVK+FG+ S+K A TPMSTTTKL KD  G  VD+K
Sbjct: 1364 KYFLGLQINQTDEGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEK 1423

Query: 214  LYRSIIGSLLYLTASRPDIAFSVGACARYQAKPKESHLVAVKRIIRYVFGTLDYGLWYPI 35
            LYR +IGSLLYLTA+RPD+  SVG CARYQ+ PK SHL+AVKRII+YV GT++YGL Y  
Sbjct: 1424 LYRGMIGSLLYLTATRPDLCLSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTR 1483

Query: 34   ETNSGIAGYSD 2
            +T+  + GY D
Sbjct: 1484 DTSLVLVGYCD 1494


>gb|ABM55238.1| integrase [Beta vulgaris]
          Length = 1516

 Score =  233 bits (593), Expect = 2e-59
 Identities = 113/189 (59%), Positives = 146/189 (77%)
 Frame = -3

Query: 568  FS*GSVDKTLFLKKIKGDVLIAQIYVDDIVFGSTCESRALSFADIMSSEFEMSMVGELSY 389
            F  G VDKTLFLK    D+L+ QIYVDDI+FG+T E+    F+ ++S+EFEMSM+GEL++
Sbjct: 1179 FKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSNEFEMSMMGELNF 1238

Query: 388  FLGLQVRQMDKGIFISQSKYAKDLVKKFGLDSAKLARTPMSTTTKLSKDSSGKDVDQKLY 209
            FLGLQ++Q +KGI + Q KY K+L+KK+GL+++K+  TPM T+T+L +DS G  VDQ  Y
Sbjct: 1239 FLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDEDSIGTSVDQTKY 1298

Query: 208  RSIIGSLLYLTASRPDIAFSVGACARYQAKPKESHLVAVKRIIRYVFGTLDYGLWYPIET 29
            R +IG LLYLTASRPDIAFSVG CAR+QA PKESHL AVKRI+RY+ GT D GL+YP   
Sbjct: 1299 RGMIGLLLYLTASRPDIAFSVGLCARFQANPKESHLTAVKRILRYLKGTDDLGLYYPRSD 1358

Query: 28   NSGIAGYSD 2
               + GY+D
Sbjct: 1359 TFELKGYAD 1367


>gb|ABH08430.1| putative integrase [Beta vulgaris]
          Length = 1516

 Score =  233 bits (593), Expect = 2e-59
 Identities = 113/189 (59%), Positives = 146/189 (77%)
 Frame = -3

Query: 568  FS*GSVDKTLFLKKIKGDVLIAQIYVDDIVFGSTCESRALSFADIMSSEFEMSMVGELSY 389
            F  G VDKTLFLK    D+L+ QIYVDDI+FG+T E+    F+ ++S+EFEMSM+GEL++
Sbjct: 1179 FKRGKVDKTLFLKSKGTDILLVQIYVDDIIFGATNETLCKEFSRLVSNEFEMSMMGELNF 1238

Query: 388  FLGLQVRQMDKGIFISQSKYAKDLVKKFGLDSAKLARTPMSTTTKLSKDSSGKDVDQKLY 209
            FLGLQ++Q +KGI + Q KY K+L+KK+GL+++K+  TPM T+T+L +DS G  VDQ  Y
Sbjct: 1239 FLGLQIKQTEKGIIVHQQKYIKELLKKYGLENSKINHTPMGTSTRLDEDSIGTSVDQTKY 1298

Query: 208  RSIIGSLLYLTASRPDIAFSVGACARYQAKPKESHLVAVKRIIRYVFGTLDYGLWYPIET 29
            R +IG LLYLTASRPDIAFSVG CAR+QA PKESHL AVKRI+RY+ GT D GL+YP   
Sbjct: 1299 RGMIGLLLYLTASRPDIAFSVGLCARFQANPKESHLTAVKRILRYLKGTDDLGLYYPRSD 1358

Query: 28   NSGIAGYSD 2
               + GY+D
Sbjct: 1359 TFELKGYAD 1367